MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-3613

Family name MIR-3613 (all species)
Seed GUUGUAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-3613
Paralogues
Orthologues Bta-Mir-3613  Cfa-Mir-3613  Cja-Mir-3613  Cpo-Mir-3613  Dno-Mir-3613  Eca-Mir-3613  Ete-Mir-3613  Hsa-Mir-3613  Laf-Mir-3613  Mdo-Mir-3613  Mml-Mir-3613  Mmr-Mir-3613  Neu-Mir-3613  Pab-Mir-3613  Sha-Mir-3613 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(oryCun2_add)
chrUn0007: 3616992-3617050 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3613)
Mir-3613 chrUn0007: 3616992-3617050 [-] UCSC Ensembl
Mir-15-P2a chrUn0007: 3664988-3665052 [-] UCSC Ensembl
Mir-15-P1a chrUn0007: 3665136-3665194 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGACACGCGAUACGAUGGUUGGGUUUGGAUUGUUGUACUUUUUUUUUUGUUCGUUGCAUUUUUGGGAACAAAAAAAAAAGCCCAACCCUUCACACCACUUCAUCGGCAUCUGUGAGGAG
Get precursor sequence
Structure
        10        20          30        40        50         
CGACACGCGAUACGAUGGUUG--|  U    UU    UA               GUUGCA 
                       GGU UGGA  GUUG  CUUUUUUUUUUGUUC      \
                       CCA ACUU  CAAC  GAAAAAAAAAACAAG      U
GAGGAGUGUCUACGGCUACUUCA^  C    CC    CC               GGUUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-3613_5p

mirBase accessionMIMAT0048611
Sequence
0- UGUUGUACUUUUUUUUUUGUUC -22
Get sequence
Star sequence

Ocu-Mir-3613_3p*

mirBase accessionMIMAT0048612
Sequence
37- ACAAAAAAAAAAGCCCAACCCU -59
Get sequence