MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-3613

Family name MIR-3613 (all species)
Seed GUUGUAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-3613  Cfa-Mir-3613  Cpo-Mir-3613  Dno-Mir-3613  Eca-Mir-3613  Ete-Mir-3613  Hsa-Mir-3613  Laf-Mir-3613  Mdo-Mir-3613  Mml-Mir-3613  Mmr-Mir-3613  Neu-Mir-3613  Ocu-Mir-3613  Pab-Mir-3613  Sha-Mir-3613 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021915.1: 65267668-65267726 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCGUAUAAUAAGAUGGUUGGGUUUGGAUUGUUGUACUUUUUUUUUUGUUCGUUGCAUUUUUAGGAACAAAAAAAAAAGCCCAACCCUUCACACCACUUCAUUCGCAUCUCAGGACCA
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Structure
        10        20          30        40        50         
UGCCGUAUAAUAAGAUGGUUG--|  U    UU    UA               GUUGCA 
                       GGU UGGA  GUUG  CUUUUUUUUUUGUUC      \
                       CCA ACUU  CAAC  GAAAAAAAAAACAAG      U
ACCAGGACUCUACGCUUACUUCA^  C    CC    CC               GAUUUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cja-Mir-3613_5p

mirBase accessionNone
Sequence
0- UGUUGUACUUUUUUUUUUGUUC -22
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Star sequence

Cja-Mir-3613_3p* (predicted)

mirBase accessionNone
Sequence
37- ACAAAAAAAAAAGCCCAACCCU -59
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