MirGeneDB ID | Laf-Mir-3613 |
Family name |
MIR-3613 (all species) |
Seed |
CAAAAAA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-3613
Cfa-Mir-3613
Cja-Mir-3613
Cpo-Mir-3613
Dno-Mir-3613
Eca-Mir-3613
Ete-Mir-3613
Hsa-Mir-3613
Mdo-Mir-3613
Mml-Mir-3613
Mmr-Mir-3613
Neu-Mir-3613
Ocu-Mir-3613
Pab-Mir-3613
Sha-Mir-3613
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010050.1: 31596801-31596859 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGACGCGCAAUGAGAUAGUUGGGUUUGGAUUGUUGUACUUUUUUUUUUGUUCGUUUAAUUUUUAGGAACAAAAAAAAAAGCCCAACCCUUCACACCACUUCAUCUGCAUCUCUCAGGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CGACGCGCAAUGAGAUAGUUG--| U UU UA GUUUAA
GGU UGGA GUUG CUUUUUUUUUUGUUC \
CCA ACUU CAAC GAAAAAAAAAACAAG U
CAGGACUCUCUACGUCUACUUCA^ C CC CC GAUUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Laf-Mir-3613_5p* |
mirBase accession | None |
Sequence |
0- UGUUGUACUUUUUUUUUUGUUC -22
Get sequence
|
Mature sequence |
Laf-Mir-3613_3p |
mirBase accession | None |
Sequence |
37- ACAAAAAAAAAAGCCCAACCCU -59
Get sequence
|