MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-506-P34

Family name MIR-506 (all species)
Seed ACCCGGU
Species Horse (Equus caballus)
MiRBase ID eca-mir-8908i
Paralogues Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1o-v2  Eca-Mir-506-P1o-v3  Eca-Mir-506-P1p-v1  Eca-Mir-506-P1p-v2  Eca-Mir-506-P1p-v3  Eca-Mir-506-P2a  Eca-Mir-506-P2b3  Eca-Mir-506-P2b4  Eca-Mir-506-P3  Eca-Mir-506-P4a  Eca-Mir-506-P4b  Eca-Mir-506-P28a  Eca-Mir-506-P28b  Eca-Mir-506-P28c-v1  Eca-Mir-506-P28c-v2  Eca-Mir-506-P28d1  Eca-Mir-506-P28d2  Eca-Mir-506-P28e1  Eca-Mir-506-P28e2  Eca-Mir-506-P28f1  Eca-Mir-506-P28f2  Eca-Mir-506-P28f3  Eca-Mir-506-P29a1  Eca-Mir-506-P29a2  Eca-Mir-506-P29b  Eca-Mir-506-P30a  Eca-Mir-506-P30b1-v1  Eca-Mir-506-P30b1-v2  Eca-Mir-506-P30b2-v1  Eca-Mir-506-P30b2-v2  Eca-Mir-506-P30c1  Eca-Mir-506-P30c2  Eca-Mir-506-P30d  Eca-Mir-506-P31a  Eca-Mir-506-P31b  Eca-Mir-506-P31c  Eca-Mir-506-P32  Eca-Mir-506-P33a  Eca-Mir-506-P33b1  Eca-Mir-506-P33b2  Eca-Mir-506-P35a-v1  Eca-Mir-506-P35a-v2  Eca-Mir-506-P35b1-v1  Eca-Mir-506-P35b1-v2  Eca-Mir-506-P35b2-v1  Eca-Mir-506-P35b2-v2  Eca-Mir-506-P35c-v1  Eca-Mir-506-P35c-v2 
Orthologues Laf-Mir-506 
Node of Origin (locus) E. caballus
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 119918769-119918825 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P34)		 Mir-506-P29b CM009179.1: 119897644-119897700 [-] UCSC Ensembl
Mir-506-P35c-v1 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P35c-v2 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P28f3 CM009179.1: 119898661-119898716 [-] UCSC Ensembl
Mir-506-P30c2 CM009179.1: 119899177-119899232 [-] UCSC Ensembl
Mir-506-P28e2 CM009179.1: 119901226-119901285 [-] UCSC Ensembl
Mir-506-P35b1-v2 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P35b1-v1 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P28f2 CM009179.1: 119904407-119904462 [-] UCSC Ensembl
Mir-506-P30d CM009179.1: 119904923-119904978 [-] UCSC Ensembl
Mir-506-P28e1 CM009179.1: 119906900-119906959 [-] UCSC Ensembl
Mir-506-P30b1-v2 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P30b1-v1 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P29a2 CM009179.1: 119908248-119908304 [-] UCSC Ensembl
Mir-506-P35b2-v2 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P35b2-v1 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P28d2 CM009179.1: 119909277-119909332 [-] UCSC Ensembl
Mir-506-P33b2 CM009179.1: 119910132-119910192 [-] UCSC Ensembl
Mir-506-P35a-v2 CM009179.1: 119910651-119910707 [-] UCSC Ensembl
Mir-506-P35a-v1 CM009179.1: 119910654-119910704 [-] UCSC Ensembl
Mir-506-P33b1 CM009179.1: 119912012-119912072 [-] UCSC Ensembl
Mir-506-P28f1 CM009179.1: 119913038-119913093 [-] UCSC Ensembl
Mir-506-P30c1 CM009179.1: 119913554-119913609 [-] UCSC Ensembl
Mir-506-P28c-v1 CM009179.1: 119915529-119915588 [-] UCSC Ensembl
Mir-506-P28c-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-542-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-506-P29a1 CM009179.1: 119916886-119916942 [-] UCSC Ensembl
Mir-506-P28b CM009179.1: 119917914-119917969 [-] UCSC Ensembl
Mir-506-P34 CM009179.1: 119918769-119918825 [-] UCSC Ensembl
Mir-506-P28a CM009179.1: 119919773-119919828 [-] UCSC Ensembl
Mir-506-P33a CM009179.1: 119921797-119921853 [-] UCSC Ensembl
Mir-9142 CM009179.1: 119927864-119927920 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACUUUGAGCCAUUCUGUGUGCAGUGCCCUACCCGGUAAGGUAGUGAUCACUUAGAUGAGGUGUGAUCACUGCCUGUCUGGGUGGAGUAACGCACAACAGGAACAAUGUUUGGGAG
Get precursor sequence
Structure
        10          20        30        40        50        
CCACUUUGAGCCAUUCUG--|    AG   C        UA             UUAGA 
                    UGUGC  UGC CUACCCGG  AGGUAGUGAUCAC     \
                    ACACG  AUG GGUGGGUC  UCCGUCACUAGUG     U
GAGGGUUUGUAACAAGGACA^    CA   A        UG             UGGAG 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-506-P34_5p
mirBase accessionMIMAT0034719
Sequence 
0- UACCCGGUAAGGUAGUGAUCAC -22
Get sequence
Star sequence

Eca-Mir-506-P34_3p*
mirBase accessionNone
Sequence 
35- GAUCACUGCCUGUCUGGGUGGA -57
Get sequence