Mir-506-P4b

MirGeneDB ID

Eca-Mir-506-P4b

Family name

MIR-506 (all species)

Seed

GAAGUGU

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1o-v2 Eca-Mir-506-P1o-v3 Eca-Mir-506-P1p-v1 Eca-Mir-506-P1p-v2 Eca-Mir-506-P1p-v3 Eca-Mir-506-P2a Eca-Mir-506-P2b3 Eca-Mir-506-P2b4 Eca-Mir-506-P3 Eca-Mir-506-P4a Eca-Mir-506-P28a Eca-Mir-506-P28b Eca-Mir-506-P28c-v1 Eca-Mir-506-P28c-v2 Eca-Mir-506-P28d1 Eca-Mir-506-P28d2 Eca-Mir-506-P28e1 Eca-Mir-506-P28e2 Eca-Mir-506-P28f1 Eca-Mir-506-P28f2 Eca-Mir-506-P28f3 Eca-Mir-506-P29a1 Eca-Mir-506-P29a2 Eca-Mir-506-P29b Eca-Mir-506-P30a Eca-Mir-506-P30b1-v1 Eca-Mir-506-P30b1-v2 Eca-Mir-506-P30b2-v1 Eca-Mir-506-P30b2-v2 Eca-Mir-506-P30c1 Eca-Mir-506-P30c2 Eca-Mir-506-P30d Eca-Mir-506-P31a Eca-Mir-506-P31b Eca-Mir-506-P31c Eca-Mir-506-P32 Eca-Mir-506-P33a Eca-Mir-506-P33b1 Eca-Mir-506-P33b2 Eca-Mir-506-P34 Eca-Mir-506-P35a-v1 Eca-Mir-506-P35a-v2 Eca-Mir-506-P35b1-v1 Eca-Mir-506-P35b1-v2 Eca-Mir-506-P35b2-v1 Eca-Mir-506-P35b2-v2 Eca-Mir-506-P35c-v1 Eca-Mir-506-P35c-v2

Orthologues

Bta-Mir-506-P4 Cfa-Mir-506-P4 Cja-Mir-506-P4 Cpo-Mir-506-P4 Dno-Mir-506-P4 Hsa-Mir-506-P4 Laf-Mir-506 Mml-Mir-506-P4 Mmr-Mir-506-P4 Mmu-Mir-506-P4 Ocu-Mir-506-P4 Pab-Mir-506-P4 Rno-Mir-506-P4

Node of Origin (locus)

E. caballus

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 120894697-120894754 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P4b)

Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4a CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCUGAAGCCAUGCUGUGUGCAGUGCCCUAUUUAGGAAGACGCUAUUCACAUAUACUGUAUUAUGAAGUGUGCCUUUCUGAAUAGUGUAAUGCUCAACGAGUACAACUUCUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACCUGAAGCCAUGCUG--| U   G   C            A   UA    CAUAUA 
                    UG GCA UGC CUAUUUAGGAAG CGC  UUCA      C
                    AC CGU AUG GAUAAGUCUUUC GUG  AAGU      U
UGGUGUCUUCAACAUGAGCA^ U   A   U            C   UG    AUUAUG 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-506-P4b_5p*

mirBase accession

None

Sequence

0- UAUUUAGGAAGACGCUAUUCACA -23

Get sequence

Mature sequence

Eca-Mir-506-P4b_3p

mirBase accession

None

Sequence

35- UGAAGUGUGCCUUUCUGAAUAGU -58

Get sequence