MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-506-P4a

Family name MIR-506 (all species)
Seed GAAGUGU
Species Horse (Equus caballus)
MiRBase ID
Paralogues Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1o-v2  Eca-Mir-506-P1o-v3  Eca-Mir-506-P1p-v1  Eca-Mir-506-P1p-v2  Eca-Mir-506-P1p-v3  Eca-Mir-506-P2a  Eca-Mir-506-P2b3  Eca-Mir-506-P2b4  Eca-Mir-506-P3  Eca-Mir-506-P4b  Eca-Mir-506-P28a  Eca-Mir-506-P28b  Eca-Mir-506-P28c-v1  Eca-Mir-506-P28c-v2  Eca-Mir-506-P28d1  Eca-Mir-506-P28d2  Eca-Mir-506-P28e1  Eca-Mir-506-P28e2  Eca-Mir-506-P28f1  Eca-Mir-506-P28f2  Eca-Mir-506-P28f3  Eca-Mir-506-P29a1  Eca-Mir-506-P29a2  Eca-Mir-506-P29b  Eca-Mir-506-P30a  Eca-Mir-506-P30b1-v1  Eca-Mir-506-P30b1-v2  Eca-Mir-506-P30b2-v1  Eca-Mir-506-P30b2-v2  Eca-Mir-506-P30c1  Eca-Mir-506-P30c2  Eca-Mir-506-P30d  Eca-Mir-506-P31a  Eca-Mir-506-P31b  Eca-Mir-506-P31c  Eca-Mir-506-P32  Eca-Mir-506-P33a  Eca-Mir-506-P33b1  Eca-Mir-506-P33b2  Eca-Mir-506-P34  Eca-Mir-506-P35a-v1  Eca-Mir-506-P35a-v2  Eca-Mir-506-P35b1-v1  Eca-Mir-506-P35b1-v2  Eca-Mir-506-P35b2-v1  Eca-Mir-506-P35b2-v2  Eca-Mir-506-P35c-v1  Eca-Mir-506-P35c-v2 
Orthologues Cja-Mir-506-P4  Cpo-Mir-506-P4  Dno-Mir-506-P4  Hsa-Mir-506-P4  Laf-Mir-506  Mml-Mir-506-P4  Mmr-Mir-506-P4  Mmu-Mir-506-P4  Ocu-Mir-506-P4  Pab-Mir-506-P4  Rno-Mir-506-P4 
Node of Origin (locus) Scrotifera
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 120894697-120894754 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P4a)
Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4b CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCUGAAGCCAUGCUGUGUGCAGUGCCCUAUUUAGGAAGACGCUAUUCACAUAUACUGUAUUAUGAAGUGUGCCUUUCUGAAUAGUGUAAUGCUCAACGAGUACAACUUCUGUGGU
Get precursor sequence
Structure
        10          20        30        40        50        
CCACCUGAAGCCAUGCUG--| U   G   C            A   UA    CAUAUA 
                    UG GCA UGC CUAUUUAGGAAG CGC  UUCA      C
                    AC CGU AUG GAUAAGUCUUUC GUG  AAGU      U
UGGUGUCUUCAACAUGAGCA^ U   A   U            C   UG    AUUAUG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-506-P4a_5p*

mirBase accessionNone
Sequence
0- UAUUUAGGAAGACGCUAUUCACA -23
Get sequence
Mature sequence

Eca-Mir-506-P4a_3p

mirBase accessionNone
Sequence
35- UGAAGUGUGCCUUUCUGAAUAGU -58
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