MirGeneDB 3.0
MirGeneDB ID

Mml-Mir-506-P4

Family name MIR-506 (all species)
Seed UAAGGCA
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-506
Paralogues Mml-Mir-506-P1a  Mml-Mir-506-P1b  Mml-Mir-506-P1c4  Mml-Mir-506-P1c5  Mml-Mir-506-P1c6  Mml-Mir-506-P1d  Mml-Mir-506-P1e  Mml-Mir-506-P2b  Mml-Mir-506-P3  Mml-Mir-506-P5o1  Mml-Mir-506-P5o2  Mml-Mir-506-P5o3  Mml-Mir-506-P5o4a  Mml-Mir-506-P5o4b  Mml-Mir-506-P6a  Mml-Mir-506-P6b  Mml-Mir-506-P6c  Mml-Mir-506-P6d  Mml-Mir-506-P6e 
Orthologues Bta-Mir-506-P4  Cfa-Mir-506-P4  Cja-Mir-506-P4  Cpo-Mir-506-P4  Dno-Mir-506-P4  Eca-Mir-506-P4a  Eca-Mir-506-P4b  Hsa-Mir-506-P4  Laf-Mir-506  Mmr-Mir-506-P4  Mmu-Mir-506-P4  Ocu-Mir-506-P4  Pab-Mir-506-P4  Rno-Mir-506-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_003339765.3_Mmul_10_traces)		 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P4)		 Mir-506-P5o4a CM014356.1: 143232188-143232245 [-] UCSC Ensembl
Mir-506-P5o4b CM014356.1: 143239333-143239390 [-] UCSC Ensembl
Mir-506-P5o3 CM014356.1: 143252920-143252977 [-] UCSC Ensembl
Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl
Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl
Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl
Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUGUCUAGUGCCGUUAUGUGUAGUGCCUUAUUCAGGAAGGUGUUACUUAAUAUAUUAAUAUUUGUAAGGCACCCUUCUGAGUAGAGUAAUGUGCAACAUGGACAUCAUUUGUGGU
Get precursor sequence
Structure
        10          20        30        40          50       
CUGUGUCUAGUGCCGUUA--  UG  G   C          A     --|  UUAAUAUA 
                    UG  UA UGC UUAUUCAGGA GGUGU  UAC        \
                    AC  GU AUG GAUGAGUCUU CCACG  AUG        U
UGGUGUUUACUACAGGUACA  GU  A   A          C     GA^  UUUAUAAU 
     110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Mml-Mir-506-P4_5p*
mirBase accessionMIMAT0026745
Sequence 
0- UAUUCAGGAAGGUGUUACUUAAU -23
Get sequence
Proposed targets TargetScanVert: mml-miR-506-5p
Mature sequence

Mml-Mir-506-P4_3p
mirBase accessionMIMAT0005762
Sequence 
35- GUAAGGCACCCUUCUGAGUAGA -57
Get sequence
Proposed targets TargetScanVert: mml-miR-506-3p