MirGeneDB 3.0
MirGeneDB ID

Mml-Mir-506-P1a

Family name MIR-506 (all species)
Seed UUGACAC
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-514a
Paralogues Mml-Mir-506-P1b  Mml-Mir-506-P1c4  Mml-Mir-506-P1c5  Mml-Mir-506-P1c6  Mml-Mir-506-P1d  Mml-Mir-506-P1e  Mml-Mir-506-P2b  Mml-Mir-506-P3  Mml-Mir-506-P4  Mml-Mir-506-P5o1  Mml-Mir-506-P5o2  Mml-Mir-506-P5o3  Mml-Mir-506-P5o4a  Mml-Mir-506-P5o4b  Mml-Mir-506-P6a  Mml-Mir-506-P6b  Mml-Mir-506-P6c  Mml-Mir-506-P6d  Mml-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1a  Hsa-Mir-506-P1a1  Hsa-Mir-506-P1a2  Hsa-Mir-506-P1a3  Laf-Mir-506  Pab-Mir-506-P1a  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_003339765.3_Mmul_10_traces)		 CM014356.1: 143309725-143309782 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1a)		 Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl
Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl
Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl
Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCCUUCAACAUGUUGUCUGUGGUACCCUACUCUGGAGAGUGACAAUCAUGUAUAAUUAAAUUUGAUUGACACUUCUGUGAGUAGAGUAAUGCAUGACACGUGCGACAGACAAUGG
Get precursor sequence
Structure
        10         20         30         40        50        
CCAUCCUUCAACAUGUU-   -   GG   C      -|   G    A      UGUAUA 
                  GUC UGU  UAC CUACUC UGGA AGUG CAAUCA      A
                  CAG ACG  AUG GAUGAG GUCU UCAC GUUAGU      U
GGUAACAGACAGCGUGCA   U   UA   A      U^   -    A      UUAAAU 
      110       100        90        80         70        60
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Star sequence

Mml-Mir-506-P1a_5p*
mirBase accessionMIMAT0026748
Sequence 
0- UACUCUGGAGAGUGACAAUCA -21
Get sequence
Proposed targets TargetScanVert: mml-miR-514a-5p
Mature sequence

Mml-Mir-506-P1a_3p
mirBase accessionMIMAT0005769
Sequence 
37- AUUGACACUUCUGUGAGUAGA -58
Get sequence
Proposed targets TargetScanVert: mml-miR-514a-3p