MirGeneDB 3.0
MirGeneDB ID

Mml-Mir-506-P1e

Family name MIR-506 (all species)
Seed UUGACAC
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-514b
Paralogues Mml-Mir-506-P1a  Mml-Mir-506-P1b  Mml-Mir-506-P1c4  Mml-Mir-506-P1c5  Mml-Mir-506-P1c6  Mml-Mir-506-P1d  Mml-Mir-506-P2b  Mml-Mir-506-P3  Mml-Mir-506-P4  Mml-Mir-506-P5o1  Mml-Mir-506-P5o2  Mml-Mir-506-P5o3  Mml-Mir-506-P5o4a  Mml-Mir-506-P5o4b  Mml-Mir-506-P6a  Mml-Mir-506-P6b  Mml-Mir-506-P6c  Mml-Mir-506-P6d  Mml-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1e  Hsa-Mir-506-P1e  Laf-Mir-506  Pab-Mir-506-P1e  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_003339765.3_Mmul_10_traces)		 CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1e)		 Mir-506-P5o4b CM014356.1: 143239333-143239390 [-] UCSC Ensembl
Mir-506-P5o3 CM014356.1: 143252920-143252977 [-] UCSC Ensembl
Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl
Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl
Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl
Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAAAUGUUCUAUUCUUCAUGUGGUACUCUUCUCAAGAGGGAGGCAAUCAUGUGUAAUUAGAUAUGAUUGACACCUCUGUGAGUAGAGUAACACAUGGUAUUUCCAUCAUCUGACAU
Get precursor sequence
Structure
        10          20        30         40        50        
CUUAAAUGUUCUAUUCU--       G      U    -|    GAGG       GUGUA 
                   UCAUGUG UACUCU CUCA AGAGG    CAAUCAU     A
                   GGUACAC AUGAGA GAGU UCUCC    GUUAGUA     U
UACAGUCUACUACCUUUAU       A      U    G^    ACA-       UAGAU 
      110       100        90        80         70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Star sequence

Mml-Mir-506-P1e_5p*
mirBase accessionMIMAT0027119
Sequence 
0- UUCUCAAGAGGGAGGCAAUCAU -22
Get sequence
Proposed targets TargetScanVert: mml-miR-514b-5p
Mature sequence

Mml-Mir-506-P1e_3p
mirBase accessionMIMAT0024348
Sequence 
37- AUUGACACCUCUGUGAGUAGA -58
Get sequence
Proposed targets TargetScanVert: mml-miR-514b-3p