Mir-506-P1e

MirGeneDB ID

Mml-Mir-506-P1e

Family name

MIR-506 (all species)

Seed

UUGACAC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-514b

Paralogues

Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P2b Mml-Mir-506-P3 Mml-Mir-506-P4 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mml-Mir-506-P6a Mml-Mir-506-P6b Mml-Mir-506-P6c Mml-Mir-506-P6d Mml-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1e Hsa-Mir-506-P1e Laf-Mir-506 Pab-Mir-506-P1e Rno-Mir-506-P1

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 143285603-143285660 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1e)

Mir-506-P5o4b CM014356.1: 143239333-143239390 [-] UCSC Ensembl
Mir-506-P5o3 CM014356.1: 143252920-143252977 [-] UCSC Ensembl
Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl
Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl
Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl
Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUAAAUGUUCUAUUCUUCAUGUGGUACUCUUCUCAAGAGGGAGGCAAUCAUGUGUAAUUAGAUAUGAUUGACACCUCUGUGAGUAGAGUAACACAUGGUAUUUCCAUCAUCUGACAU

Get precursor sequence

Structure

        10          20        30         40        50        
CUUAAAUGUUCUAUUCU--       G      U    -|    GAGG       GUGUA 
                   UCAUGUG UACUCU CUCA AGAGG    CAAUCAU     A
                   GGUACAC AUGAGA GAGU UCUCC    GUUAGUA     U
UACAGUCUACUACCUUUAU       A      U    G^    ACA-       UAGAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-506-P1e_5p*

mirBase accession

MIMAT0027119

Sequence

0- UUCUCAAGAGGGAGGCAAUCAU -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-514b-5p

Mature sequence

Mml-Mir-506-P1e_3p

mirBase accession

MIMAT0024348

Sequence

37- AUUGACACCUCUGUGAGUAGA -58

Get sequence

Proposed targets

TargetScanVert: mml-miR-514b-3p