| MirGeneDB ID | Mml-Mir-506-P5o4a |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | UCACAAG |
| Species | Rhesus monkey (Macaca mulatta) |
| MiRBase ID | mml-mir-513b-2 |
| Paralogues | Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P1e Mml-Mir-506-P2b Mml-Mir-506-P3 Mml-Mir-506-P4 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4b Mml-Mir-506-P6a Mml-Mir-506-P6b Mml-Mir-506-P6c Mml-Mir-506-P6d Mml-Mir-506-P6e |
| Orthologues | Bta-Mir-506-P5 Cpo-Mir-506-P5 Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5 |
| Node of Origin (locus) | M. mulatta |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014356.1: 143232188-143232245 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-506-P5o4a) |
Mir-506-P5o4a
CM014356.1: 143232188-143232245 [-]
UCSC
Ensembl
Mir-506-P5o4b CM014356.1: 143239333-143239390 [-] UCSC Ensembl Mir-506-P5o3 CM014356.1: 143252920-143252977 [-] UCSC Ensembl Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCACAUUCAGCCAUUUGGUUUACAGUGCCUUUCACAAGGAGGUGUCAUUUAUGUGAACUAAACUAUAAAUGUCACCUUUUUGGGAAGAGUAAUGUACAGCAUGCACUGCAAAUGUGGUGet precursor sequence |
| Structure | 10 20 30 40 50 CCACAUUCAGCCAUUUG- - G -| A U GUGAA GUU UACA UGC CUUUC CAAGGAGGUG CAUUUAU C CGA AUGU AUG GAAGG GUUUUUCCAC GUAAAUA U UGGUGUAAACGUCACGUA C A A^ - U UCAAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Mml-Mir-506-P5o4a_5p |
| mirBase accession | MIMAT0005767 |
| Sequence |
0- UUCACAAGGAGGUGUCAUUUAU -22
Get sequence
|
| Proposed targets |
TargetScanVert: mml-miR-513b |
| Star sequence | Mml-Mir-506-P5o4a_3p* |
| mirBase accession | None |
| Sequence |
36- AAAUGUCACCUUUUUGGGAAGA -58
Get sequence
|
