MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-506-P5

Family name MIR-506 (all species)
Seed UCACAAG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-513
Paralogues Ocu-Mir-506-P1f  Ocu-Mir-506-P1g  Ocu-Mir-506-P1h  Ocu-Mir-506-P2a  Ocu-Mir-506-P3  Ocu-Mir-506-P4 
Orthologues Bta-Mir-506-P5  Cja-Mir-506-P5d1  Cja-Mir-506-P5d2  Cpo-Mir-506-P5  Ete-Mir-506-P5d  Ete-Mir-506-P5e  Hsa-Mir-506-P5a1  Hsa-Mir-506-P5a2  Hsa-Mir-506-P5b  Hsa-Mir-506-P5c  Laf-Mir-506  Mml-Mir-506-P5o1  Mml-Mir-506-P5o2  Mml-Mir-506-P5o3  Mml-Mir-506-P5o4a  Mml-Mir-506-P5o4b  Mmr-Mir-506-P5  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Rno-Mir-506-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P5)
Mir-506-P5 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P1h chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P4 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2a chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P1g chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P1f chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAUUCAGCUAUUCAGUGUGCAGUGCCUUUCACAAGAAGGUGUCAUUCAUGUGAACCAAAAAUAUGAAUGAUGCCUUUUUGAGAAAAGUAAUGUACAUCAUGAAAUGCAUAUGUGGC
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Structure
        10          20        30        40        50         
CCACAUUCAGCUAUUCA--|      G   C    A                   UGAAC 
                   GUGUGCA UGC UUUC CAAGAAGGUGUCAUUCAUG     \
                   UACAUGU AUG AAAG GUUUUUCCGUAGUAAGUAU     C
CGGUGUAUACGUAAAGUAC^      A   A    A                   AAAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-506-P5_5p

mirBase accessionMIMAT0048513
Sequence
0- UUCACAAGAAGGUGUCAUUCAUG -23
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Star sequence

Ocu-Mir-506-P5_3p*

mirBase accessionMIMAT0048514
Sequence
36- UGAAUGAUGCCUUUUUGAGAAAA -59
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