MirGeneDB ID | Pab-Mir-506-P5o6 |
---|---|
Family name | MIR-506 (all species) |
Seed | UCACAGG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e |
Orthologues | Bta-Mir-506-P5 Cpo-Mir-506-P5 Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5 |
Node of Origin (locus) | P. abelii |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 153482115-153482172 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CCACAUUCAGCCAUUCAGUGUACAGUGCCUUUCACAGGGAGGUGUCAUUUAUGUGAACUAAAAUAUAAAUCUCACCUUUCUGAGAAGAGUAAUGUACAGCAUGCACUGCAUAUGUGGUGet precursor sequence |
Structure | 10 20 30 40 50 CCACAUUCAGCCAUUCAG--| G C A GG UC UGAA UGUACA UGC UUUC CAG AGGUG AUUUAUG C ACAUGU AUG GAAG GUC UCCAC UAAAUAU U UGGUGUAUACGUCACGUACG^ A A A UU UC AAAA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-506-P5o6_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUCACAGGGAGGUGUCAUUUAUG -23
Get sequence
|
Star sequence | Pab-Mir-506-P5o6_3p* (predicted) |
mirBase accession | None |
Sequence |
35- UAAAUCUCACCUUUCUGAGAAGA -58
Get sequence
|