MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-506-P5o6

Family name MIR-506 (all species)
Seed UCACAGG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Bta-Mir-506-P5  Cpo-Mir-506-P5  Laf-Mir-506  Mmr-Mir-506-P5  Ocu-Mir-506-P5  Rno-Mir-506-P5 
Node of Origin (locus) P. abelii
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054702.2: 153482115-153482172 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAUUCAGCCAUUCAGUGUACAGUGCCUUUCACAGGGAGGUGUCAUUUAUGUGAACUAAAAUAUAAAUCUCACCUUUCUGAGAAGAGUAAUGUACAGCAUGCACUGCAUAUGUGGU
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Structure
        10          20        30        40        50        
CCACAUUCAGCCAUUCAG--|     G   C    A   GG     UC       UGAA 
                    UGUACA UGC UUUC CAG  AGGUG  AUUUAUG    C
                    ACAUGU AUG GAAG GUC  UCCAC  UAAAUAU    U
UGGUGUAUACGUCACGUACG^     A   A    A   UU     UC       AAAA 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-506-P5o6_5p (predicted)

mirBase accessionNone
Sequence
0- UUCACAGGGAGGUGUCAUUUAUG -23
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Star sequence

Pab-Mir-506-P5o6_3p* (predicted)

mirBase accessionNone
Sequence
35- UAAAUCUCACCUUUCUGAGAAGA -58
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