MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-506-P6d

Family name MIR-506 (all species)
Seed ACUUGGA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6e 
Orthologues Cja-Mir-506-P6d  Hsa-Mir-506-P6d  Laf-Mir-506  Mml-Mir-506-P6d 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054702.2: 152289353-152289409 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUACAAUCAGACAUGCUGUGGGAAGUGCCCUACUUGGAAAGGCAUCAGUUGCUUAAAUUACAUGUAACUAUUCCCUUUCUGAGUAGAGUAAAGCUUACCAAGUACAGGUUCAUGGUG
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Structure
        10          20        30        40        50        
CUACAAUCAGACAUGCU--|    AAG   C     UG      CAUC      UUAAA 
                   GUGGG   UGC CUACU  GAAAGG    AGUUGC     \
                   CAUUC   AUG GAUGA  CUUUCC    UCAAUG     U
GUGGUACUUGGACAUGAAC^    GAA   A     GU      CUUA      UACAU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-506-P6d_5p (predicted)

mirBase accessionNone
Sequence
0- UACUUGGAAAGGCAUCAGUUGC -22
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Star sequence

Pab-Mir-506-P6d_3p* (predicted)

mirBase accessionNone
Sequence
35- AACUAUUCCCUUUCUGAGUAGA -57
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