MirGeneDB ID | Pab-Mir-506-P6d |
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Family name | MIR-506 (all species) |
Seed | ACUUGGA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6e |
Orthologues | Cja-Mir-506-P6d Hsa-Mir-506-P6d Laf-Mir-506 Mml-Mir-506-P6d |
Node of Origin (locus) | Simiiformes |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 152289353-152289409 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUACAAUCAGACAUGCUGUGGGAAGUGCCCUACUUGGAAAGGCAUCAGUUGCUUAAAUUACAUGUAACUAUUCCCUUUCUGAGUAGAGUAAAGCUUACCAAGUACAGGUUCAUGGUGGet precursor sequence |
Structure | 10 20 30 40 50 CUACAAUCAGACAUGCU--| AAG C UG CAUC UUAAA GUGGG UGC CUACU GAAAGG AGUUGC \ CAUUC AUG GAUGA CUUUCC UCAAUG U GUGGUACUUGGACAUGAAC^ GAA A GU CUUA UACAU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14) |
Mature sequence | Pab-Mir-506-P6d_5p (predicted) |
mirBase accession | None |
Sequence |
0- UACUUGGAAAGGCAUCAGUUGC -22
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|
Star sequence | Pab-Mir-506-P6d_3p* (predicted) |
mirBase accession | None |
Sequence |
35- AACUAUUCCCUUUCUGAGUAGA -57
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|