| MirGeneDB ID | Pab-Mir-506-P1c8 |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | GAUUGGU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e |
| Orthologues | Cfa-Mir-506-P1 Cja-Mir-506-P1c Laf-Mir-506 Rno-Mir-506-P1 |
| Node of Origin (locus) | P. abelii |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
ref|NC_036926.1|:142259298-142259561: 100-155 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGCAGUGGCAAUCAUGUAUAUUAAAAAUGAUUGGUACGUCUGCGGGUAGAGUACUGCAUGACACAUGCAACUUACAUGAUGet precursor sequence |
| Structure | 10 20 30 40 50 CCAUCCUCAGACAUGCU- - UG C -| CA G GUAUA GU GUG GUAC CUA CUGCAG GUG CAAUCAU \ CA UAC CAUG GAU GGCGUC CAU GUUAGUA U UAGUACAUUCAACGUACA G GU A G^ UG G AAAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Pab-Mir-506-P1c8_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UACUGCAGCAGUGGCAAUCAUG -22
Get sequence
|
| Mature sequence | Pab-Mir-506-P1c8_3p |
| mirBase accession | None |
| Sequence |
33- UGAUUGGUACGUCUGCGGGUAGA -56
Get sequence
|
