MirGeneDB ID | Pab-Mir-506-P1c10 |
Family name |
MIR-506 (all species) |
Seed |
GAUUGGU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-506-P1a
Pab-Mir-506-P1b
Pab-Mir-506-P1c7
Pab-Mir-506-P1c8
Pab-Mir-506-P1c9
Pab-Mir-506-P1c11
Pab-Mir-506-P1c12
Pab-Mir-506-P1c13
Pab-Mir-506-P1d
Pab-Mir-506-P1e
Pab-Mir-506-P2b
Pab-Mir-506-P3
Pab-Mir-506-P4
Pab-Mir-506-P5o5
Pab-Mir-506-P5o6
Pab-Mir-506-P5o7
Pab-Mir-506-P5o8
Pab-Mir-506-P6a
Pab-Mir-506-P6b
Pab-Mir-506-P6c
Pab-Mir-506-P6d
Pab-Mir-506-P6e
|
Orthologues |
Cfa-Mir-506-P1
Cja-Mir-506-P1c
Laf-Mir-506
Rno-Mir-506-P1
|
Node of Origin (locus) |
P. abelii
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 153532425-153532482 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGCGGGUAGAGUACUGCAUGACACAUGCAACAUACAUGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCAUCCUCAGACAUGCU- - UG C -| A G GUAUA
GU GUG GUAC CUA CUGCAGAC GUG CAAUCAU A
CA UAC CAUG GAU GGCGUCUG CAU GUUAGUA U
UAGUACAUACAACGUACA G GU A G^ - G AAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pab-Mir-506-P1c10_5p* |
mirBase accession | None |
Sequence |
0- UACUGCAGACAGUGGCAAUCAUG -23
Get sequence
|
Mature sequence |
Pab-Mir-506-P1c10_3p |
mirBase accession | None |
Sequence |
35- UGAUUGGUACGUCUGCGGGUAGA -58
Get sequence
|