MirGeneDB ID | Pab-Mir-506-P1c10 |
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Family name | MIR-506 (all species) |
Seed | GAUUGGU |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e |
Orthologues | Cfa-Mir-506-P1 Cja-Mir-506-P1c Laf-Mir-506 Rno-Mir-506-P1 |
Node of Origin (locus) | P. abelii |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 153532425-153532482 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGCGGGUAGAGUACUGCAUGACACAUGCAACAUACAUGAUGet precursor sequence |
Structure | 10 20 30 40 50 CCAUCCUCAGACAUGCU- - UG C -| A G GUAUA GU GUG GUAC CUA CUGCAGAC GUG CAAUCAU A CA UAC CAUG GAU GGCGUCUG CAU GUUAGUA U UAGUACAUACAACGUACA G GU A G^ - G AAAAU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Pab-Mir-506-P1c10_5p* |
mirBase accession | None |
Sequence |
0- UACUGCAGACAGUGGCAAUCAUG -23
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|
Mature sequence | Pab-Mir-506-P1c10_3p |
mirBase accession | None |
Sequence |
35- UGAUUGGUACGUCUGCGGGUAGA -58
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|