MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P1e

Family name MIR-506 (all species)
Seed UCUCAAG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1e  Hsa-Mir-506-P1e  Laf-Mir-506  Mml-Mir-506-P1e  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153515734-153515791 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCAAAUGUUCUAUUCUUCAUGUGGUACUCUUCUCAAGAGGGAGGCAAUCAUGUGUAAUUAGAUAUGAUUGACACCUCUGUGAGUGGAGUAACACAUGAUAUAUACAUCAUAUGACAU
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Structure
        10          20        30         40        50        
CUCAAAUGUUCUAUUCU--       G      U    -|    GAGG       GUGUA 
                   UCAUGUG UACUCU CUCA AGAGG    CAAUCAU     A
                   AGUACAC AUGAGG GAGU UCUCC    GUUAGUA     U
UACAGUAUACUACAUAUAU       A      U    G^    ACA-       UAGAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-506-P1e_5p (predicted)
mirBase accessionNone
Sequence 
0- UUCUCAAGAGGGAGGCAAUCAU -22
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Star sequence

Pab-Mir-506-P1e_3p* (predicted)
mirBase accessionNone
Sequence 
37- AUUGACACCUCUGUGAGUGGA -58
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