| MirGeneDB ID | Pab-Mir-506-P1e |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | UCUCAAG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e |
| Orthologues | Cfa-Mir-506-P1 Cja-Mir-506-P1e Hsa-Mir-506-P1e Laf-Mir-506 Mml-Mir-506-P1e Rno-Mir-506-P1 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 153515734-153515791 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUCAAAUGUUCUAUUCUUCAUGUGGUACUCUUCUCAAGAGGGAGGCAAUCAUGUGUAAUUAGAUAUGAUUGACACCUCUGUGAGUGGAGUAACACAUGAUAUAUACAUCAUAUGACAUGet precursor sequence |
| Structure | 10 20 30 40 50 CUCAAAUGUUCUAUUCU-- G U -| GAGG GUGUA UCAUGUG UACUCU CUCA AGAGG CAAUCAU A AGUACAC AUGAGG GAGU UCUCC GUUAGUA U UACAGUAUACUACAUAUAU A U G^ ACA- UAGAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-506-P1e_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCUCAAGAGGGAGGCAAUCAU -22
Get sequence
|
| Star sequence | Pab-Mir-506-P1e_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- AUUGACACCUCUGUGAGUGGA -58
Get sequence
|
