Mir-506-P1c9

MirGeneDB ID

Pab-Mir-506-P1c9

Family name

MIR-506 (all species)

Seed

GAUUGGU

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1c Laf-Mir-506 Rno-Mir-506-P1

Node of Origin (locus)

P. abelii

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 153533312-153533369 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGCGGGUAGAGUACUGCAUGACACAUGCAACAUACAUGAU

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Structure

        10          20        30         40        50        
CCAUCCUCAGACAUGCU-  -   UG    C   -|       A   G       GUAUA 
                  GU GUG  GUAC CUA CUGCAGAC GUG CAAUCAU     A
                  CA UAC  CAUG GAU GGCGUCUG CAU GUUAGUA     U
UAGUACAUACAACGUACA  G   GU    A   G^       -   G       AAAAU 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-506-P1c9_5p*

mirBase accession

None

Sequence

0- UACUGCAGACAGUGGCAAUCAUG -23

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Mature sequence

Pab-Mir-506-P1c9_3p

mirBase accession

None

Sequence

35- UGAUUGGUACGUCUGCGGGUAGA -58

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