| MirGeneDB ID | Pab-Mir-506-P5o7 |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | UCACAAG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e |
| Orthologues | Bta-Mir-506-P5 Cpo-Mir-506-P5 Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5 |
| Node of Origin (locus) | P. abelii |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 153467634-153467691 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCACAUUCAGCCAUUCAGUGUACAGUGCCUUUCACAAGGAGGUGUCAUUUAUGUGAACUAAAAUGUAAAUGUCACCUUUUUGAGAAGAGUAAUGUACAGCAUGCACUGCAUAUGUGGUGet precursor sequence |
| Structure | 10 20 30 40 50 CCACAUUCAGCCAUUCAG--| G C A U GUGAA UGUACA UGC UUUC CAAGGAGGUG CAUUUAU C ACAUGU AUG GAAG GUUUUUCCAC GUAAAUG U UGGUGUAUACGUCACGUACG^ A A A U UAAAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-506-P5o7_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCACAAGGAGGUGUCAUUUAU -22
Get sequence
|
| Star sequence | Pab-Mir-506-P5o7_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- UAAAUGUCACCUUUUUGAGAAGA -58
Get sequence
|
