Mir-506-P5

MirGeneDB ID

Rno-Mir-506-P5

Family name

MIR-506 (all species)

Seed

UCACAAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-3585

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2b Rno-Mir-506-P4 Rno-Mir-506-P11 Rno-Mir-506-P13 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P16 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25

Orthologues

Bta-Mir-506-P5 Cja-Mir-506-P5d1 Cja-Mir-506-P5d2 Cpo-Mir-506-P5 Ete-Mir-506-P5d Ete-Mir-506-P5e Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Laf-Mir-506 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mmr-Mir-506-P5 Ocu-Mir-506-P5 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 155344207-155344263 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5)

Mir-506-P1 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2b chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P4 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P5 chrX: 155344207-155344263 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAUGGAGCAAAUCUGUGUGCAGUGCUUUUCACAAGAAGGUGUCUUUCAUGGGGAUUAAAACAUGAACGGCCCUUGUUGUGAGGAGUAAUGUACAACAUGUAAUGCCUGUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAUGGAGCAAAUCUG--|     G            G    U   U      GGGA 
                    UGUGCA UGCUUUUCACAA AAGG GUC UUCAUG    U
                    ACAUGU AUGAGGAGUGUU UUCC CGG AAGUAC    U
UGGUGUGUCCGUAAUGUACA^     A            G    -   C      AAAA 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-506-P5_5p

mirBase accession

MIMAT0017878

Sequence

0- UUCACAAGAAGGUGUCUUUCAUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-3585-5p
miRDB: MIMAT0017878

Star sequence

Rno-Mir-506-P5_3p*

mirBase accession

MIMAT0017879

Sequence

35- UGAACGGCCCUUGUUGUGAGGA -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-3585-3p
miRDB: MIMAT0017879