Mir-506-P5a1

MirGeneDB ID

Hsa-Mir-506-P5a1

Family name

MIR-506 (all species)

Seed

UCACAGG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-513a-2

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Bta-Mir-506-P5 Cpo-Mir-506-P5 Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5

Node of Origin (locus)

H. sapiens

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147225860-147225917 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5a1)

Mir-506-P5c chrX: 147189717-147189774 [-] UCSC Ensembl
Mir-506-P5b chrX: 147199057-147199114 [-] UCSC Ensembl
Mir-506-P5a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCCAUUCAGUGUGCAGUGCCUUUCACAGGGAGGUGUCAUUUAUGUGAACUAAAAUAUAAAUUUCACCUUUCUGAGAAGGGUAAUGUACAGCAUGCACUGCAUAUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAUUCAGCCAUUCAG--|     G        A   GG     UC       UGAA 
                    UGUGCA UGCCUUUC CAG  AGGUG  AUUUAUG    C
                    ACAUGU AUGGGAAG GUC  UCCAC  UAAAUAU    U
UGGUGUAUACGUCACGUACG^     A        A   UU     UU       AAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-506-P5a1_5p

mirBase accession

MIMAT0002877

Sequence

0- UUCACAGGGAGGUGUCAUUUAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0002877
TargetScanVert: hsa-miR-513a-5p
TargetMiner: hsa-miR-513a-5p
miRDB: MIMAT0002877

Star sequence

Hsa-Mir-506-P5a1_3p*

mirBase accession

MIMAT0004777

Sequence

35- UAAAUUUCACCUUUCUGAGAAGG -58

Get sequence

Proposed targets

microrna.org: MIMAT0004777
TargetScanVert: hsa-miR-513a-3p
TargetMiner: hsa-miR-513a-3p
miRDB: MIMAT0004777