| MirGeneDB ID | Hsa-Mir-506-P1c2 |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | GAUUGGU |
| Species | Human (Homo sapiens) |
| MiRBase ID | hsa-mir-509-3 |
| Paralogues | Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e |
| Orthologues | Cfa-Mir-506-P1 Cja-Mir-506-P1c Laf-Mir-506 Rno-Mir-506-P1 |
| Node of Origin (locus) | H. sapiens |
| Node of Origin (family) | Eutheria |
| Genome context (hg38) |
chrX: 147259661-147259717 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-506-P1c2) |
Mir-506-P5a2
chrX: 147213498-147213555 [-]
UCSC
Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl Mir-506-P1a3 chrX: 147279266-147279323 [-] UCSC Ensembl Mir-506-P1a1 chrX: 147281957-147282014 [-] UCSC Ensembl Mir-506-P1a2 chrX: 147284655-147284712 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGUGGGUAGAGUACUGCAUGACACGUGCAACAUACAUGAUGet precursor sequence |
| Structure | 10 20 30 40 50 CCAUCCUCAGACAUGCU- - UG C -|UG G GUAUA GU GUG GUAC CUA C CAGACGUG CAAUCAU A CA UAC CAUG GAU G GUCUGCAU GUUAGUA U UAGUACAUACAACGUGCA G GU A G^GU G AAAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Hsa-Mir-506-P1c2_5p* |
| mirBase accession | MIMAT0004975 |
| Sequence |
0- UACUGCAGACGUGGCAAUCAUG -22
Get sequence
|
| Proposed targets |
microrna.org: MIMAT0004975 TargetScanVert: hsa-miR-509-3-5p TargetMiner: hsa-miR-509-3-5p miRDB: MIMAT0004975 |
| Mature sequence | Hsa-Mir-506-P1c2_3p |
| mirBase accession | MIMAT0002881 |
| Sequence |
34- UGAUUGGUACGUCUGUGGGUAGA -57
Get sequence
|
| Proposed targets |
microrna.org: MIMAT0002881 TargetScanVert: hsa-miR-509-3p TargetMiner: hsa-miR-509-3p miRDB: MIMAT0002881 |
