Mir-506-P1

MirGeneDB ID

Cfa-Mir-506-P1

Family name

MIR-506 (all species)

Seed

ACUCCAG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-514

Paralogues

Cfa-Mir-506-P2a Cfa-Mir-506-P2b Cfa-Mir-506-P3a Cfa-Mir-506-P3b Cfa-Mir-506-P4b

Orthologues

Cja-Mir-506-P1a Cja-Mir-506-P1b Cja-Mir-506-P1c Cja-Mir-506-P1d Cja-Mir-506-P1e Dno-Mir-506-P1i Dno-Mir-506-P1j Dno-Mir-506-P1k Dno-Mir-506-P1l Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1o-v2 Eca-Mir-506-P1o-v3 Eca-Mir-506-P1p-v1 Eca-Mir-506-P1p-v2 Eca-Mir-506-P1p-v3 Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Laf-Mir-506 Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P1e Mmr-Mir-506-P1o1 Mmr-Mir-506-P1o2 Ocu-Mir-506-P1f Ocu-Mir-506-P1g Ocu-Mir-506-P1h Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Rno-Mir-506-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chrX: 115688019-115688076 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1)

Mir-506-P4b chrX: 115652425-115652482 [-] UCSC Ensembl
Mir-506-P2b chrX: 115652721-115652779 [-] UCSC Ensembl
Mir-506-P3b chrX: 115658398-115658456 [-] UCSC Ensembl
Mir-506-P3a chrX: 115658609-115658666 [-] UCSC Ensembl
Mir-506-P2a chrX: 115665393-115665450 [-] UCSC Ensembl
Mir-506-P1 chrX: 115688019-115688076 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCAACCUGGACAUUCUUUAUGUAGUACCCUACUCCAGAGAGUGGCAAUCAUUUGUAAUUAUAUGUGAUUGACACCUCUGUGAGUGGAGUAAUGCAUGACAUGUACGACACAGAUGAU

Get precursor sequence

Structure

        10          20        30         40        50        
GUCAACCUGGACAUUCU--       G   C      -|    A   G       UUGUA 
                   UUAUGUA UAC CUACUC CAGAG GUG CAAUCAU     A
                   AGUACGU AUG GGUGAG GUCUC CAC GUUAGUG     U
UAGUAGACACAGCAUGUAC       A   A      U^    -   A       UAUAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-506-P1_5p

mirBase accession

None

Sequence

0- UACUCCAGAGAGUGGCAAUCAUU -23

Get sequence

Star sequence

Cfa-Mir-506-P1_3p*

mirBase accession

MIMAT0009877

Sequence

35- UGAUUGACACCUCUGUGAGUGGA -58

Get sequence

Proposed targets

TargetScanVert: cfa-miR-514
miRDB: MIMAT0009877