MirGeneDB ID | Dno-Mir-506-P1l |
---|---|
Family name | MIR-506 (all species) |
Seed | GAUUGAC |
Species | Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID | dno-mir-509a-1 |
Paralogues | Dno-Mir-506-P1i Dno-Mir-506-P1j Dno-Mir-506-P1k Dno-Mir-506-P2b Dno-Mir-506-P3 Dno-Mir-506-P4 |
Orthologues | Cfa-Mir-506-P1 Laf-Mir-506 Rno-Mir-506-P1 |
Node of Origin (locus) | D. novemcinctus |
Node of Origin (family) | Eutheria |
Genome context (dasNov3) |
JH564535: 715717-715774 [+] UCSC Ensembl |
Clustered miRNAs (< 50kb from Mir-506-P1l) |
Mir-506-P3
JH564535: 697744-697800 [+]
UCSC
Ensembl
Mir-506-P1l JH564535: 715717-715774 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUAUCUUCAGAUAUGCUGUGUGUGGUACCCUACUCCAGAGAGUGGCAAUCGUGUAUAAUUAAAUAUGAUUGACACCUCUGUGAGUGGAGUAAUGCAUGACAUGUACAACAUAUGUGAUGet precursor sequence |
Structure | 10 20 30 40 50 CUAUCUUCAGAUAUGCU- - GG C -| A G UAUA GU GUGU UAC CUACUC CAGAG GUG CAAUCGUG A CA UACG AUG GGUGAG GUCUC CAC GUUAGUAU U UAGUGUAUACAACAUGUA G UA A U^ - A AAAU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Dno-Mir-506-P1l_5p* (predicted) |
mirBase accession | MIMAT0047956 |
Sequence |
0- UACUCCAGAGAGUGGCAAUCGUG -23
Get sequence
|
Mature sequence | Dno-Mir-506-P1l_3p (predicted) |
mirBase accession | MIMAT0047957 |
Sequence |
35- UGAUUGACACCUCUGUGAGUGGA -58
Get sequence
|