MirGeneDB ID | Dno-Mir-506-P1j |
---|---|
Family name | MIR-506 (all species) |
Seed | GAUUGAC |
Species | Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID | |
Paralogues | Dno-Mir-506-P1i Dno-Mir-506-P1k Dno-Mir-506-P1l Dno-Mir-506-P2b Dno-Mir-506-P3 Dno-Mir-506-P4 |
Orthologues | Cfa-Mir-506-P1 Laf-Mir-506 Rno-Mir-506-P1 |
Node of Origin (locus) | D. novemcinctus |
Node of Origin (family) | Eutheria |
Genome context (dasNov3) |
JH564535: 675854-675911 [+] UCSC Ensembl |
Clustered miRNAs (< 50kb from Mir-506-P1j) |
Mir-506-P2b
JH564535: 655807-655864 [+]
UCSC
Ensembl
Mir-506-P3 JH564535: 697744-697800 [+] UCSC Ensembl Mir-506-P1l JH564535: 715717-715774 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCAACUUUAGACACGCUGUGUGUGGUACCCUACUCCAGAGCGUGGCAAUCAUGUAUAAUUAAAUAUGAUUGACACCUCUGUGAGUGGAGUAACGCAUGACAUGCACGACAUAUGUGAUGet precursor sequence |
Structure | 10 20 30 40 50 UCAACUUUAGACACGCU- - G C -| C G UAUA GU GUGUG UAC CUACUC CAGAG GUG CAAUCAUG A CA UACGC AUG GGUGAG GUCUC CAC GUUAGUAU U UAGUGUAUACAGCACGUA G A A U^ - A AAAU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Dno-Mir-506-P1j_5p* |
mirBase accession | None |
Sequence |
0- UACUCCAGAGCGUGGCAAUCAUG -23
Get sequence
|
Mature sequence | Dno-Mir-506-P1j_3p (predicted) |
mirBase accession | None |
Sequence |
35- UGAUUGACACCUCUGUGAGUGGA -58
Get sequence
|