Mir-506-P1k

MirGeneDB ID

Dno-Mir-506-P1k

Family name

MIR-506 (all species)

Seed

GACUGGC

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

Paralogues

Dno-Mir-506-P1i Dno-Mir-506-P1j Dno-Mir-506-P1l Dno-Mir-506-P2b Dno-Mir-506-P3 Dno-Mir-506-P4

Orthologues

Cfa-Mir-506-P1 Laf-Mir-506 Rno-Mir-506-P1

Node of Origin (locus)

D. novemcinctus

Node of Origin (family)

Eutheria

Genome context
(dasNov3)

JH564535: 690101-690158 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1k)

Mir-506-P2b JH564535: 655807-655864 [+] UCSC Ensembl
Mir-506-P3 JH564535: 697744-697800 [+] UCSC Ensembl
Mir-506-P1l JH564535: 715717-715774 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCAUCUUCAACAUUCUGUGUGUGGUACCCUACUCCAGAGCGUGGCAAUCAUGUAUAAUUAAAUGUGACUGGCACCUCUGUGAGUGGAGUAACACAUGACAUGUACAACAUAUAUGAU

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Structure

        10          20        30         40        50        
UUCAUCUUCAACAUUCU-  -     G   C      -|    C   G  A    GUAUA 
                  GU GUGUG UAC CUACUC CAGAG GUG CA UCAU     A
                  CA UACAC AUG GGUGAG GUCUC CAC GU AGUG     U
UAGUAUAUACAACAUGUA  G     A   A      U^    -   G  C    UAAAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-506-P1k_5p*

mirBase accession

None

Sequence

0- UACUCCAGAGCGUGGCAAUCAUG -23

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Mature sequence

Dno-Mir-506-P1k_3p

mirBase accession

None

Sequence

35- UGACUGGCACCUCUGUGAGUGGA -58

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