MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-506-P1

Family name MIR-506 (all species)
Seed ACUCAGU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-201
Paralogues Rno-Mir-506-P2  Rno-Mir-506-P6  Rno-Mir-506-P7  Rno-Mir-506-P14  Rno-Mir-506-P15  Rno-Mir-506-P17  Rno-Mir-506-P18  Rno-Mir-506-P19  Rno-Mir-506-P20  Rno-Mir-506-P21  Rno-Mir-506-P22  Rno-Mir-506-P23  Rno-Mir-506-P24  Rno-Mir-506-P25  Rno-Mir-506-P26  Rno-Mir-506-P28 
Orthologues Bta-Mir-506-P1  Cfa-Mir-506-P1  Cpo-Mir-506-o1  Cpo-Mir-506-P1  Dno-Mir-506-P1  Hsa-Mir-506-P1  Mml-Mir-506-P1  Mmu-Mir-506-P1  Ocu-Mir-506-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 155339151-155339208 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1)		 Mir-506-P7 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2 chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P1 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P6 chrX: 155344207-155344263 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUACCUUCAAUGAUGUUAUGUACAGUACCUCACUCAGUAAGGCAUUGUUCUUCUAUACUAAUAAAUGAACAGCGCCUUUCUGUGUAGCGUAAUGUGCAACCUGGACAGCAUUUGUAGU
Get precursor sequence
Structure
        10          20         30        40        50        
CUACCUUCAAUGAUGUUA--      G   -| C  U   U     A      UUCUAUA 
                    UGUACA UAC CU AC CAG AAGGC UUGUUC       C
                    ACGUGU AUG GA UG GUC UUCCG GACAAG       U
UGAUGUUUACGACAGGUCCA      A   C^ -  U   U     C      UAAAUAA 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-506-P1_5p
mirBase accessionMIMAT0012846
Sequence 
0- CACUCAGUAAGGCAUUGUUCUUC -23
Get sequence
Proposed targets microrna.org: MIMAT0012846
TargetScanVert: rno-miR-201-5p
miRDB: MIMAT0012846
Star sequence

Rno-Mir-506-P1_3p*
mirBase accessionMIMAT0017364
Sequence 
35- UGAACAGCGCCUUUCUGUGUAGC -58
Get sequence
Proposed targets TargetScanVert: rno-miR-201-3p
miRDB: MIMAT0017364