MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-506-P1

Family name MIR-506 (all species)
Seed ACUCCAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-509
Paralogues Rno-Mir-506-P2b  Rno-Mir-506-P4  Rno-Mir-506-P5  Rno-Mir-506-P11  Rno-Mir-506-P13  Rno-Mir-506-P14  Rno-Mir-506-P15  Rno-Mir-506-P16  Rno-Mir-506-P17  Rno-Mir-506-P18  Rno-Mir-506-P19  Rno-Mir-506-P21  Rno-Mir-506-P22  Rno-Mir-506-P23  Rno-Mir-506-P24  Rno-Mir-506-P25 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Dno-Mir-506-P1i  Dno-Mir-506-P1j  Dno-Mir-506-P1k  Dno-Mir-506-P1l  Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1o-v2  Eca-Mir-506-P1o-v3  Eca-Mir-506-P1p-v1  Eca-Mir-506-P1p-v2  Eca-Mir-506-P1p-v3  Hsa-Mir-506-P1a1  Hsa-Mir-506-P1a2  Hsa-Mir-506-P1a3  Hsa-Mir-506-P1b  Hsa-Mir-506-P1c1  Hsa-Mir-506-P1c2  Hsa-Mir-506-P1c3  Hsa-Mir-506-P1d  Hsa-Mir-506-P1e  Laf-Mir-506  Mml-Mir-506-P1a  Mml-Mir-506-P1b  Mml-Mir-506-P1c4  Mml-Mir-506-P1c5  Mml-Mir-506-P1c6  Mml-Mir-506-P1d  Mml-Mir-506-P1e  Mmr-Mir-506-P1o1  Mmr-Mir-506-P1o2  Ocu-Mir-506-P1f  Ocu-Mir-506-P1g  Ocu-Mir-506-P1h  Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chrX: 155317221-155317277 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1)
Mir-506-P1 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2b chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P4 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P5 chrX: 155344207-155344263 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUGAUCAUGACAACUGUGUGUGGUUCUUUACUCCAGAAUAUGGCAAUCAUGCAUAAUUAAAUGUGAUUGACAUGUCUGCAGUGGAGUAACACAUGCAAUAUAUGGCAUGUGCAGU
Get precursor sequence
Structure
        10          20        30        40        50        
AGUUGAUCAUGACAACU--|      GUU       C    A    G       GCAUA 
                   GUGUGUG   CUUUACU CAGA UAUG CAAUCAU     A
                   CGUACAC   GAGGUGA GUCU GUAC GUUAGUG     U
UGACGUGUACGGUAUAUAA^      AAU       C    -    A       UAAAU 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
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Mature sequence

Rno-Mir-506-P1_5p

mirBase accessionMIMAT0024849
Sequence
0- UACUCCAGAAUAUGGCAAUCAUG -23
Get sequence
Proposed targets TargetScanVert: rno-miR-509-5p
miRDB: MIMAT0024849
Co-mature sequence

Rno-Mir-506-P1_3p

mirBase accessionMIMAT0024850
Sequence
35- UGAUUGACAUGUCUGCAGUGGA -57
Get sequence
Proposed targets TargetScanVert: rno-miR-509-3p
miRDB: MIMAT0024850