MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P1c13

Family name MIR-506 (all species)
Seed GAUUGGU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1c  Laf-Mir-506  Rno-Mir-506-P1 
Node of Origin (locus) P. abelii
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 ref|NC_036926.1|:142254888-142255151: 100-157 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUCCUCAGACGUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUACAAUUAAAAAUGAUUGGUACGUUUGCGGGUAGAGUACUGCAUGACACAUGCAACAUACAUGAU
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Structure
        10          20        30         40        50        
GCAUCCUCAGACGUGCU-  -   UG    C   -|       A   G       GUACA 
                  GU GUG  GUAC CUA CUGCAGAC GUG CAAUCAU     A
                  CA UAC  CAUG GAU GGCGUUUG CAU GUUAGUA     U
UAGUACAUACAACGUACA  G   GU    A   G^       -   G       AAAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-506-P1c13_5p*
mirBase accessionNone
Sequence 
0- UACUGCAGACAGUGGCAAUCAUG -23
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Mature sequence

Pab-Mir-506-P1c13_3p (predicted)
mirBase accessionNone
Sequence 
35- UGAUUGGUACGUUUGCGGGUAGA -58
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