MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-506-P1c

Family name MIR-506 (all species)
Seed GAUUGAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Cja-Mir-506-P2a  Cja-Mir-506-P3  Cja-Mir-506-P4  Cja-Mir-506-P5d1  Cja-Mir-506-P5d2  Cja-Mir-506-P6a  Cja-Mir-506-P6b  Cja-Mir-506-P6c  Cja-Mir-506-P6d  Cja-Mir-506-P6e  Cja-Mir-506-P6o1  Cja-Mir-506-P6o2  Cja-Mir-506-P6o3  Cja-Mir-506-P6o4 
Orthologues Cfa-Mir-506-P1  Hsa-Mir-506-P1c1  Hsa-Mir-506-P1c2  Hsa-Mir-506-P1c3  Laf-Mir-506  Mml-Mir-506-P1c4  Mml-Mir-506-P1c5  Mml-Mir-506-P1c6  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 139236938-139236995 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCCUCAGACAUGCUGUGUGUGGUACCCUGCUGCAGAGAGUGGCAAUCAUUUAUAAUAAAAAAUGAUUGACACGUCUGCAGGUAGAGUAAUGCAUGACACAUGCAACAUACAUGAU
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Structure
        10          20        30         40        50        
CCAUCCUCAGACAUGCU-  -    GG   C   -|      GA   G        UAUA 
                  GU GUGU  UAC CUG CUGCAGA  GUG CAAUCAUU    A
                  CA UACG  AUG GAU GACGUCU  CAC GUUAGUAA    U
UAGUACAUACAACGUACA  G    UA   A   G^      G-   A        AAAA 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-506-P1c_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGCUGCAGAGAGUGGCAAUCAUU -23
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Mature sequence

Cja-Mir-506-P1c_3p (predicted)
mirBase accessionNone
Sequence 
35- UGAUUGACACGUCUGCAGGUAGA -58
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