| MirGeneDB ID | Cja-Mir-506-P1c |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | GAUUGAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-506-P1a Cja-Mir-506-P1b Cja-Mir-506-P1d Cja-Mir-506-P1e Cja-Mir-506-P2a Cja-Mir-506-P3 Cja-Mir-506-P4 Cja-Mir-506-P5d1 Cja-Mir-506-P5d2 Cja-Mir-506-P6a Cja-Mir-506-P6b Cja-Mir-506-P6c Cja-Mir-506-P6d Cja-Mir-506-P6e Cja-Mir-506-P6o1 Cja-Mir-506-P6o2 Cja-Mir-506-P6o3 Cja-Mir-506-P6o4 |
| Orthologues | Cfa-Mir-506-P1 Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Laf-Mir-506 Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Rno-Mir-506-P1 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 139236938-139236995 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAUCCUCAGACAUGCUGUGUGUGGUACCCUGCUGCAGAGAGUGGCAAUCAUUUAUAAUAAAAAAUGAUUGACACGUCUGCAGGUAGAGUAAUGCAUGACACAUGCAACAUACAUGAUGet precursor sequence |
| Structure | 10 20 30 40 50 CCAUCCUCAGACAUGCU- - GG C -| GA G UAUA GU GUGU UAC CUG CUGCAGA GUG CAAUCAUU A CA UACG AUG GAU GACGUCU CAC GUUAGUAA U UAGUACAUACAACGUACA G UA A G^ G- A AAAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-506-P1c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCUGCAGAGAGUGGCAAUCAUU -23
Get sequence
|
| Mature sequence | Cja-Mir-506-P1c_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- UGAUUGACACGUCUGCAGGUAGA -58
Get sequence
|
