MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-506-P6o4

Family name MIR-506 (all species)
Seed ACUGGGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Cja-Mir-506-P2a  Cja-Mir-506-P3  Cja-Mir-506-P4  Cja-Mir-506-P5d1  Cja-Mir-506-P5d2  Cja-Mir-506-P6a  Cja-Mir-506-P6b  Cja-Mir-506-P6c  Cja-Mir-506-P6d  Cja-Mir-506-P6e  Cja-Mir-506-P6o1  Cja-Mir-506-P6o2  Cja-Mir-506-P6o3 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. jacchus
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021937.1: 138009628-138009684 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAAUUAGCCAUGUUGUGGGAAGUUCCCUACUCAGAAAUGUGCCAGCCACUUUGAUUACAUGUCACUGGGUCAUUUCUGGGUAGAGUAAGUACAAGUUUGUGGUGGUUUUCAGAC
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Structure
        10        20          30        40        50        
CCACAAUUAGCCAUGUUGUGGGAAGUUCC--|            UG    CC  UUUGA 
                               CUACUCAGAAAUG  CCAG  AC     \
                               GAUGGGUCUUUAC  GGUC  UG     U
CAGACUUUUGGUGGUGUUUGAACAUGAAUGA^            UG    AC  UACAU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Cja-Mir-506-P6o4_5p* (predicted)

mirBase accessionNone
Sequence
0- UACUCAGAAAUGUGCCAGCCAC -22
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Mature sequence

Cja-Mir-506-P6o4_3p (predicted)

mirBase accessionNone
Sequence
35- CACUGGGUCAUUUCUGGGUAGA -57
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