MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-506-P3

Family name MIR-506 (all species)
Seed GAUUGUC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Cja-Mir-506-P2a  Cja-Mir-506-P4  Cja-Mir-506-P5d1  Cja-Mir-506-P5d2  Cja-Mir-506-P6a  Cja-Mir-506-P6b  Cja-Mir-506-P6c  Cja-Mir-506-P6d  Cja-Mir-506-P6e  Cja-Mir-506-P6o1  Cja-Mir-506-P6o2  Cja-Mir-506-P6o3  Cja-Mir-506-P6o4 
Orthologues Bta-Mir-506-P3  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b  Dno-Mir-506-P3  Eca-Mir-506-P3  Hsa-Mir-506-P3  Laf-Mir-506  Mml-Mir-506-P3  Mmr-Mir-506-P3  Ocu-Mir-506-P3  Pab-Mir-506-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021937.1: 139219593-139219650 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUACCACCUUCAUCUGAGUGUAGGGCCCUACUCCAGAGGGUGUCGAUCACAUAAACUAAAACACGAUUGUCAGCUUUUUGAGUAGAGUAAUACACAUCACAUACAACAUAUUUGGU
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Structure
        10          20        30        40        50        
AGCUACCACCUUCAUCU-  -|    GG  C      C     G  U     ACAUAAA 
                  GA GUGUA  GC CUACUC AGAGG UG CGAUC       C
                  CU CACAU  UG GAUGAG UUUUC AC GUUAG       U
UGGUUUAUACAACAUACA  A^    AA  A      U     G  U     CACAAAA 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-506-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- UACUCCAGAGGGUGUCGAUCACA -23
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Mature sequence

Cja-Mir-506-P3_3p (predicted)

mirBase accessionNone
Sequence
35- CGAUUGUCAGCUUUUUGAGUAGA -58
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