Mir-506-P3

MirGeneDB ID

Mml-Mir-506-P3

Family name

MIR-506 (all species)

Seed

UUGUCGC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-508

Paralogues

Mml-Mir-506-P1 Mml-Mir-506-P2 Mml-Mir-506-P4d Mml-Mir-506-P4e Mml-Mir-506-P4f Mml-Mir-506-P5 Mml-Mir-506-P6a Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Mml-Mir-506-P6c1 Mml-Mir-506-P6c2 Mml-Mir-506-P7a Mml-Mir-506-P8 Mml-Mir-506-P9 Mml-Mir-506-P10 Mml-Mir-506-P11 Mml-Mir-506-P12 Mml-Mir-506-P13 Mml-Mir-506-P29

Orthologues

Bta-Mir-506-P3 Cfa-Mir-506-P3a Cfa-Mir-506-P3b Cpo-Mir-506-o3 Dno-Mir-506-P3 Hsa-Mir-506-P3 Ocu-Mir-506-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rheMac8_trace)

chrX: 140953023-140953080 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P3)

Mir-506-P6b1 chrX: 140909251-140909308 [-] UCSC Ensembl
Mir-506-P6c1 chrX: 140924370-140924427 [-] UCSC Ensembl
Mir-506-P6a chrX: 140933343-140933400 [-] UCSC Ensembl
Mir-506-P1 chrX: 140946831-140946887 [-] UCSC Ensembl
Mir-506-P2 chrX: 140947157-140947214 [-] UCSC Ensembl
Mir-506-P3 chrX: 140953023-140953080 [-] UCSC Ensembl
Mir-506-P8 chrX: 140957066-140957123 [-] UCSC Ensembl
Mir-506-P4e chrX: 140966427-140966484 [-] UCSC Ensembl
Mir-506-P5 chrX: 140974554-140974611 [-] UCSC Ensembl
Mir-506-P7a chrX: 140981185-140981242 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUCACCAUCUUCAGCUGAGUGUCGUGCUCUACUCCAGAGGGCGUCACUCACAUAAACUAAAACAUGAUUGUCGCCUUUUUGAGUAGAGUAAUACACAUCACGUAAGGCAUAUUUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
AGUCACCAUCUUCAGCU-  -|   CG          C        U  C   CAUAAA 
                  GA GUGU  UGCUCUACUC AGAGGGCG CA UCA      C
                  CU CACA  AUGAGAUGAG UUUUCCGC GU AGU      U
UGGUUUAUACGGAAUGCA  A^   UA          U        U  U   ACAAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

The Dicer cut is shifted -2 relative to human.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-506-P3_5p*

mirBase accession

MIMAT0026746

Sequence

0- UACUCCAGAGGGCGUCACUCA -21

Get sequence

Proposed targets

TargetScanVert: mml-miR-508-5p

Mature sequence

Mml-Mir-506-P3_3p

mirBase accession

MIMAT0005764

Sequence

37- AUUGUCGCCUUUUUGAGUAGA -58

Get sequence

Proposed targets

TargetScanVert: mml-miR-508-3p