Mir-506-P1b

MirGeneDB ID

Mml-Mir-506-P1b

Family name

MIR-506 (all species)

Seed

ACUCCGG

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-510

Paralogues

Mml-Mir-506-P1a Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P1e Mml-Mir-506-P2b Mml-Mir-506-P3 Mml-Mir-506-P4 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mml-Mir-506-P6a Mml-Mir-506-P6b Mml-Mir-506-P6c Mml-Mir-506-P6d Mml-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1b Hsa-Mir-506-P1b Laf-Mir-506 Pab-Mir-506-P1b Rno-Mir-506-P1

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 143303098-143303155 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1b)

Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl
Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl
Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl
Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCAGGAAUGCUGUGUGUGUGUGGUAUCCUACUCCGGAGAGUGGCAAUCACAUAUAAUUAAGUGUGAUUGAAACCUCUAAGAGUGGAGUAACACAUGACAUGUACUACAUAUGAAAU

Get precursor sequence

Structure

        10          20        30         40        50        
UUUCAGGAAUGCUGUGU-  -     G  UC      C-|   A  GG        UAUA 
                  GU GUGUG UA  CUACUC  GGAG GU  CAAUCACA    A
                  CA UACAC AU  GGUGAG  UCUC CA  GUUAGUGU    U
UAAAGUAUACAUCAUGUA  G     A  GA      AA^   -  AA        GAAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-506-P1b_5p

mirBase accession

MIMAT0005766

Sequence

0- UACUCCGGAGAGUGGCAAUCACA -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-510-5p

Star sequence

Mml-Mir-506-P1b_3p*

mirBase accession

MIMAT0026747

Sequence

35- UGAUUGAAACCUCUAAGAGUGGA -58

Get sequence

Proposed targets

TargetScanVert: mml-miR-510-3p