MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P1b

Family name MIR-506 (all species)
Seed ACUCCGG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1b  Hsa-Mir-506-P1b  Laf-Mir-506  Mml-Mir-506-P1b  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153552186-153552245 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGGAAUGCUGUGUGUGUGUGGUGUCCUACUCCGGAGAGUGGCAAUCACAUGUUCAAUCAAGUGUGAUUGAAACCUCUAAGAGUGGAAUAACACAUGACAUGUACUACAUAUGCAAU
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Structure
        10            20        30         40        50         
UUUCAGGAAUGCUGUGU----|     GGUG   U    C-    A  GG        UGUUC 
                     GUGUGU    UCC ACUC  GGAG GU  CAAUCACA     A
                     UACACA    AGG UGAG  UCUC CA  GUUAGUGU     A
UAACGUAUACAUCAUGUACAG^     AUA-   -    AA    -  AA        GAACU 
.       110       100         90         80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-506-P1b_5p
mirBase accessionNone
Sequence 
0- UACUCCGGAGAGUGGCAAUCACA -23
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Star sequence

Pab-Mir-506-P1b_3p* (predicted)
mirBase accessionNone
Sequence 
37- UGAUUGAAACCUCUAAGAGUGGA -60
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