| MirGeneDB ID | Pab-Mir-506-P1b |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | ACUCCGG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-506-P1a Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e |
| Orthologues | Cfa-Mir-506-P1 Cja-Mir-506-P1b Hsa-Mir-506-P1b Laf-Mir-506 Mml-Mir-506-P1b Rno-Mir-506-P1 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 153552186-153552245 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUUCAGGAAUGCUGUGUGUGUGUGGUGUCCUACUCCGGAGAGUGGCAAUCACAUGUUCAAUCAAGUGUGAUUGAAACCUCUAAGAGUGGAAUAACACAUGACAUGUACUACAUAUGCAAUGet precursor sequence |
| Structure | 10 20 30 40 50 UUUCAGGAAUGCUGUGU----| GGUG U C- A GG UGUUC GUGUGU UCC ACUC GGAG GU CAAUCACA A UACACA AGG UGAG UCUC CA GUUAGUGU A UAACGUAUACAUCAUGUACAG^ AUA- - AA - AA GAACU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-506-P1b_5p |
| mirBase accession | None |
| Sequence |
0- UACUCCGGAGAGUGGCAAUCACA -23
Get sequence
|
| Star sequence | Pab-Mir-506-P1b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- UGAUUGAAACCUCUAAGAGUGGA -60
Get sequence
|
