MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P1a

Family name MIR-506 (all species)
Seed UUGACAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1a  Hsa-Mir-506-P1a1  Hsa-Mir-506-P1a2  Hsa-Mir-506-P1a3  Laf-Mir-506  Mml-Mir-506-P1a  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153559159-153559216 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCCUUAAACAUGUUGUCUGUGGUACCCUACUCUGGAGAGUGGCAAUCAUGUGUAAUUAAAUUUGAUUGACACCUCUGUGAGUAGAGUAACGCAUGACACAUACGACAGACAAUGG
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Structure
        10         20         30         40        50        
CCAUCCUUAAACAUGUU-   -    G   C      -|    A   G      UGUGUA 
                  GUC UGUG UAC CUACUC UGGAG GUG CAAUCA      A
                  CAG ACGC AUG GAUGAG GUCUC CAC GUUAGU      U
GGUAACAGACAGCAUACA   U    A   A      U^    -   A      UUAAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-506-P1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- UACUCUGGAGAGUGGCAAUCA -21
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Mature sequence

Pab-Mir-506-P1a_3p (predicted)
mirBase accessionNone
Sequence 
37- AUUGACACCUCUGUGAGUAGA -58
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