Mir-506-P1b

MirGeneDB ID

Hsa-Mir-506-P1b

Family name

MIR-506 (all species)

Seed

ACUCAGG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-510

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1b Laf-Mir-506 Mml-Mir-506-P1b Pab-Mir-506-P1b Rno-Mir-506-P1

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147272342-147272399 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1b)

Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P1a3 chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P1a1 chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P1a2 chrX: 147284655-147284712 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGGAAUGCUGUGUAUGUGUGUGGUGUCCUACUCAGGAGAGUGGCAAUCACAUGUAAUUAGGUGUGAUUGAAACCUCUAAGAGUGGAGUAACACAUGACAUGUACUACAUAUGCAAU

Get precursor sequence

Structure

        10          20        30         40        50        
UCAGGAAUGCUGUGUAU-  -     G  UC      A-|   A  GG        UGUA 
                  GU GUGUG UG  CUACUC  GGAG GU  CAAUCACA    A
                  CA UACAC AU  GGUGAG  UCUC CA  GUUAGUGU    U
UAACGUAUACAUCAUGUA  G     A  GA      AA^   -  AA        GGAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-506-P1b_5p

mirBase accession

MIMAT0002882

Sequence

0- UACUCAGGAGAGUGGCAAUCACA -23

Get sequence

Proposed targets

microrna.org: MIMAT0002882
TargetScanVert: hsa-miR-510-5p
miRDB: MIMAT0002882

Star sequence

Hsa-Mir-506-P1b_3p*

mirBase accession

MIMAT0026613

Sequence

35- UGAUUGAAACCUCUAAGAGUGGA -58

Get sequence

Proposed targets

TargetScanVert: hsa-miR-510-3p
miRDB: MIMAT0026613