Mir-506-P1d

MirGeneDB ID

Hsa-Mir-506-P1d

Family name

MIR-506 (all species)

Seed

GAUUGAA

Species

Human (Homo sapiens)

MiRBase ID

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1d Laf-Mir-506 Mml-Mir-506-P1d Pab-Mir-506-P1d Rno-Mir-506-P1

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147255308-147255368 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1d)

Mir-506-P5a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P1a3 chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P1a1 chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P1a2 chrX: 147284655-147284712 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUUAGACAUGCUGUCUGCGGGGCCUUACUCGAGAGAGUAGCAAUCACAUAUGGUAAUGACAUAUGAUUGAAACCUCUACGAGUGGUGUAACACGUGACAUAUGCAGCAUAUGUAAU

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Structure

        10         20          30         40        50          
CCAUCCUUAGACAUGCU-   U   GG--  C       -|   A  AG      CAUAUGGU 
                  GUC GCG    GC UUACUCG AGAG GU  CAAUCA        \
                  CAG UGC    UG GGUGAGC UCUC CA  GUUAGU        A
UAAUGUAUACGACGUAUA   -   ACAA  U       A^   -  AA      AUACAGUA 
 .       110        100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-506-P1d_5p*

mirBase accession

None

Sequence

0- UACUCGAGAGAGUAGCAAUCACA -23

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Mature sequence

Hsa-Mir-506-P1d_3p

mirBase accession

None

Sequence

38- UGAUUGAAACCUCUACGAGUGGU -61

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