Mir-506-P6c

MirGeneDB ID

Hsa-Mir-506-P6c

Family name

MIR-506 (all species)

Seed

ACUCAAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-888

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Cja-Mir-506-P6c Laf-Mir-506 Mml-Mir-506-P6c Pab-Mir-506-P6c

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 145994794-145994850 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6c)

Mir-506-P6e chrX: 145992760-145992816 [-] UCSC Ensembl
Mir-506-P6d chrX: 145994285-145994341 [-] UCSC Ensembl
Mir-506-P6c chrX: 145994794-145994850 [-] UCSC Ensembl
Mir-506-P6b chrX: 145996678-145996734 [-] UCSC Ensembl
Mir-506-P6a chrX: 145997208-145997264 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAAUUAGCCAUGUUGUGGGCAGUGCUCUACUCAAAAAGCUGUCAGUCACUUAGAUUACAUGUGACUGACACCUCUUUGGGUGAAGGAAGGCUCACCAAGUACACUUUUGUGGUG

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAAUUAGCCAUGUU--|     AGUG  C        A  C          UUAGA 
                   GUGGGC    CU UACUCAAA AG UGUCAGUCAC     \
                   CACUCG    GA GUGGGUUU UC ACAGUCAGUG     U
GUGGUGUUUUCACAUGAAC^     GAAG  A        C  C          UACAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-506-P6c_5p

mirBase accession

MIMAT0004916

Sequence

0- UACUCAAAAAGCUGUCAGUCAC -22

Get sequence

Proposed targets

microrna.org: MIMAT0004916
TargetScanVert: hsa-miR-888-5p
TargetMiner: hsa-miR-888-5p
miRDB: MIMAT0004916

Star sequence

Hsa-Mir-506-P6c_3p*

mirBase accession

MIMAT0004917

Sequence

35- GACUGACACCUCUUUGGGUGAA -57

Get sequence

Proposed targets

microrna.org: MIMAT0004917
TargetScanVert: hsa-miR-888-3p
TargetMiner: hsa-miR-888-3p
miRDB: MIMAT0004917