Mir-506-P6d

MirGeneDB ID

Hsa-Mir-506-P6d

Family name

MIR-506 (all species)

Seed

ACUUGGA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-890

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6e

Orthologues

Cja-Mir-506-P6d Laf-Mir-506 Mml-Mir-506-P6d Pab-Mir-506-P6d

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 145994285-145994341 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6d)

Mir-506-P6e chrX: 145992760-145992816 [-] UCSC Ensembl
Mir-506-P6d chrX: 145994285-145994341 [-] UCSC Ensembl
Mir-506-P6c chrX: 145994794-145994850 [-] UCSC Ensembl
Mir-506-P6b chrX: 145996678-145996734 [-] UCSC Ensembl
Mir-506-P6a chrX: 145997208-145997264 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACAAUCAGACAUGCUGUGGGAAGUGCCCUACUUGGAAAGGCAUCAGUUGCUUAGAUUACAUGUAACUAUUCCCUUUCUGAGUAGAGUAAGUCUUACCAAGUACAAGUUCAUGGUG

Get precursor sequence

Structure

        10          20        30        40        50        
CUACAAUCAGACAUGCU--|     AG   C     UG      CAUC      UUAGA 
                   GUGGGA  UGC CUACU  GAAAGG    AGUUGC     \
                   CAUUCU  AUG GAUGA  CUUUCC    UCAAUG     U
GUGGUACUUGAACAUGAAC^     GA   A     GU      CUUA      UACAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-506-P6d_5p

mirBase accession

MIMAT0004912

Sequence

0- UACUUGGAAAGGCAUCAGUUGC -22

Get sequence

Proposed targets

microrna.org: MIMAT0004912
TargetScanVert: hsa-miR-890
TargetMiner: hsa-miR-890
miRDB: MIMAT0004912

Star sequence

Hsa-Mir-506-P6d_3p*

mirBase accession

None

Sequence

35- AACUAUUCCCUUUCUGAGUAGA -57

Get sequence