MirGeneDB 3.0

MirGeneDB ID

Hsa-Mir-506-P1c3

Family name MIR-506 (all species)
Seed GAUUGGU
Species Human (Homo sapiens)
MiRBase ID hsa-mir-509-2
Paralogues Hsa-Mir-506-P1a1  Hsa-Mir-506-P1a2  Hsa-Mir-506-P1a3  Hsa-Mir-506-P1b  Hsa-Mir-506-P1c1  Hsa-Mir-506-P1c2  Hsa-Mir-506-P1d  Hsa-Mir-506-P1e  Hsa-Mir-506-P2b  Hsa-Mir-506-P3  Hsa-Mir-506-P4  Hsa-Mir-506-P5a1  Hsa-Mir-506-P5a2  Hsa-Mir-506-P5b  Hsa-Mir-506-P5c  Hsa-Mir-506-P6a  Hsa-Mir-506-P6b  Hsa-Mir-506-P6c  Hsa-Mir-506-P6d  Hsa-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1c  Laf-Mir-506  Rno-Mir-506-P1 
Node of Origin (locus) H. sapiens
Node of Origin (family) Eutheria
Genome context
(hg38)
chrX: 147258774-147258831 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1c3)
Mir-506-P5a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P1a3 chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P1a1 chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P1a2 chrX: 147284655-147284712 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGUGGGUAGAGUACUGCAUGACACGUGCAACAUACAUGAU
Get precursor sequence
Structure
        10          20        30         40        50        
CCAUCCUCAGACAUGCU-  -   UG    C   -|UG     A   G       GUAUA 
                  GU GUG  GUAC CUA C  CAGAC GUG CAAUCAU     A
                  CA UAC  CAUG GAU G  GUCUG CAU GUUAGUA     U
UAGUACAUACAACGUGCA  G   GU    A   G^GU     -   G       AAAAU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-506-P1c3_5p*

mirBase accessionMIMAT0004779
Sequence
0- UACUGCAGACAGUGGCAAUCAUG -23
Get sequence
Proposed targets microrna.org: MIMAT0004779
TargetScanVert: hsa-miR-509-5p
TargetMiner: hsa-miR-509-5p
miRDB: MIMAT0004779
Mature sequence

Hsa-Mir-506-P1c3_3p

mirBase accessionMIMAT0002881
Sequence
35- UGAUUGGUACGUCUGUGGGUAGA -58
Get sequence
Proposed targets microrna.org: MIMAT0002881
TargetScanVert: hsa-miR-509-3p
TargetMiner: hsa-miR-509-3p
miRDB: MIMAT0002881