| MirGeneDB ID | Cja-Mir-506-P1d |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | GAUUGAA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-506-P1a Cja-Mir-506-P1b Cja-Mir-506-P1c Cja-Mir-506-P1e Cja-Mir-506-P2a Cja-Mir-506-P3 Cja-Mir-506-P4 Cja-Mir-506-P5d1 Cja-Mir-506-P5d2 Cja-Mir-506-P6a Cja-Mir-506-P6b Cja-Mir-506-P6c Cja-Mir-506-P6d Cja-Mir-506-P6e Cja-Mir-506-P6o1 Cja-Mir-506-P6o2 Cja-Mir-506-P6o3 Cja-Mir-506-P6o4 |
| Orthologues | Cfa-Mir-506-P1 Hsa-Mir-506-P1d Laf-Mir-506 Mml-Mir-506-P1d Pab-Mir-506-P1d Rno-Mir-506-P1 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 139234111-139234171 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAUCGUUAGACAUGAUGUCUGUGGUAUAUUACUCGAGAGAGUAGCAAUCACAUAUGGUAAUUACAUAUGAUUGAAACCUCUGUGAGUAGCAUGACACAUGACAUAUACAGCAUAUGCAGUGet precursor sequence |
| Structure | 10 20 30 40 50 CCAUCGUUAGACAUGAU- - G A -| A AG CAUAUGGU GUC UGUG UAU UUACUCG AGAG GU CAAUCA \ CAG ACAC GUA GAUGAGU UCUC CA GUUAGU A UGACGUAUACGACAUAUA U A C G^ - AA AUACAUUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-506-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UACUCGAGAGAGUAGCAAUCACA -23
Get sequence
|
| Mature sequence | Cja-Mir-506-P1d_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UGAUUGAAACCUCUGUGAGUAGC -61
Get sequence
|
