MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-506-P1e

Family name MIR-506 (all species)
Seed ACUCAAG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P2a  Cja-Mir-506-P3  Cja-Mir-506-P4  Cja-Mir-506-P5d1  Cja-Mir-506-P5d2  Cja-Mir-506-P6a  Cja-Mir-506-P6b  Cja-Mir-506-P6c  Cja-Mir-506-P6d  Cja-Mir-506-P6e  Cja-Mir-506-P6o1  Cja-Mir-506-P6o2  Cja-Mir-506-P6o3  Cja-Mir-506-P6o4 
Orthologues Cfa-Mir-506-P1  Hsa-Mir-506-P1e  Laf-Mir-506  Mml-Mir-506-P1e  Pab-Mir-506-P1e  Rno-Mir-506-P1 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021937.1: 139229332-139229388 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGAAUGUUCUAUUCUUCGUGUGGUACUCUACUCAAGAGGGGGCAAUCAUGUGUAAUUAGUUAUGAUUGACACCUCUGUGAGUGGAGUAACACAUGAUAUAUACAUCAAAGGACAU
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Structure
        10          20        30         40        50       
CUUGAAUGUUCUAUUCU--       G           -|    GGG       GUGUA 
                   UCGUGUG UACUCUACUCA AGAGG   CAAUCAU     A
                   AGUACAC AUGAGGUGAGU UCUCC   GUUAGUA     U
UACAGGAAACUACAUAUAU       A           G^    ACA       UUGAU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Cja-Mir-506-P1e_5p (predicted)

mirBase accessionNone
Sequence
0- UACUCAAGAGGGGGCAAUCAU -21
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Star sequence

Cja-Mir-506-P1e_3p* (predicted)

mirBase accessionNone
Sequence
36- AUUGACACCUCUGUGAGUGGA -57
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