| MirGeneDB ID | Cja-Mir-506-P5d2 |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | UCUCAAG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-506-P1a Cja-Mir-506-P1b Cja-Mir-506-P1c Cja-Mir-506-P1d Cja-Mir-506-P1e Cja-Mir-506-P2a Cja-Mir-506-P3 Cja-Mir-506-P4 Cja-Mir-506-P5d1 Cja-Mir-506-P6a Cja-Mir-506-P6b Cja-Mir-506-P6c Cja-Mir-506-P6d Cja-Mir-506-P6e Cja-Mir-506-P6o1 Cja-Mir-506-P6o2 Cja-Mir-506-P6o3 Cja-Mir-506-P6o4 |
| Orthologues | Bta-Mir-506-P5 Cpo-Mir-506-P5 Ete-Mir-506-P5d Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5 |
| Node of Origin (locus) | C. jacchus |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 139194332-139194389 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCACAUUCAGCCAUUCAGCGUGCAGUGCCUUUCUCAAGAAGGUGGCAUUCAUGUGAGCUAAAACAUGAAUGUCGCCUUUUUGAGAAGAGUAAUGUACAGCAUGUACUGCGCAUGUGGUGet precursor sequence |
| Structure | 10 20 30 40 50
CCACAUUCAGCCAUUCA- -| G C UGAG
GC GUGCA UGC UUUCUCAAGAAGGUGGCAUUCAUG C
CG CAUGU AUG GAAGAGUUUUUCCGCUGUAAGUAC U
UGGUGUACGCGUCAUGUA A^ A A AAAA
110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-506-P5d2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCUCAAGAAGGUGGCAUUCAUG -23
Get sequence
|
| Star sequence | Cja-Mir-506-P5d2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- UGAAUGUCGCCUUUUUGAGAAGA -58
Get sequence
|
