| MirGeneDB ID | Ete-Mir-506-P5d |
|---|
| Family name |
MIR-506 (all species) |
|---|
| Seed |
UCACAAG |
|---|
| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ete-Mir-506-P5e
|
|---|
| Orthologues |
Bta-Mir-506-P5
Cja-Mir-506-P5d1
Cja-Mir-506-P5d2
Cpo-Mir-506-P5
Laf-Mir-506
Mmr-Mir-506-P5
Ocu-Mir-506-P5
Rno-Mir-506-P5
|
|---|
| Node of Origin (locus) |
E. telfairi
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(echTel2) |
JH980627: 17259-17316 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCACCUUCAGUUGUUCUGUGUGCGGUGCCUUUCACAAGAAGGUGUCUUUCAUGUACAGUCAAAUGUGAACGUCACCUUCUUGAGAAACUUACUGUACCACAAGCACAACAUGUGUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCACCUUCAGUUGUUCU- -| CC A UCU GUACA
GU GUGCGGUG UUUC CAAGAAGGUG UUCAU G
CA CAUGUCAU AAAG GUUCUUCCAC AAGUG U
GUGUGUGUACAACACGAA C^ UC A UGC UAAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ete-Mir-506-P5d_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCACAAGAAGGUGUCUUUCAUG -23
Get sequence
|
|---|
| Star sequence |
Ete-Mir-506-P5d_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UGAACGUCACCUUCUUGAGAAAC -58
Get sequence
|
|---|
