| MirGeneDB ID | Ete-Mir-506-P5e |
|---|
| Family name |
MIR-506 (all species) |
|---|
| Seed |
UCACAAG |
|---|
| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ete-Mir-506-P5d
|
|---|
| Orthologues |
Bta-Mir-506-P5
Cpo-Mir-506-P5
Laf-Mir-506
Mmr-Mir-506-P5
Ocu-Mir-506-P5
Rno-Mir-506-P5
|
|---|
| Node of Origin (locus) |
E. telfairi
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(echTel2) |
JH980398: 466-523 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCACCUUCAGUUGUUCAGUGUGCGGUGCCUUUCACAAGAAGGUGUCUUUCAUGUACAGUCAAAUGUGAACGUUACCUUCUUGAGAAACUUACUGUACCACAAGCACAACAUGUGUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCACCUUCAGUUGUUCA- -| CC A UCU GUACA
GU GUGCGGUG UUUC CAAGAAGGUG UUCAU G
CA CAUGUCAU AAAG GUUCUUCCAU AAGUG U
GUGUGUGUACAACACGAA C^ UC A UGC UAAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ete-Mir-506-P5e_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCACAAGAAGGUGUCUUUCAUG -23
Get sequence
|
|---|
| Star sequence |
Ete-Mir-506-P5e_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UGAACGUUACCUUCUUGAGAAAC -58
Get sequence
|
|---|
