MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-506-P6e

Family name MIR-506 (all species)
Seed GCUGUUU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Cja-Mir-506-P2a  Cja-Mir-506-P3  Cja-Mir-506-P4  Cja-Mir-506-P5d1  Cja-Mir-506-P5d2  Cja-Mir-506-P6a  Cja-Mir-506-P6b  Cja-Mir-506-P6c  Cja-Mir-506-P6d  Cja-Mir-506-P6o1  Cja-Mir-506-P6o2  Cja-Mir-506-P6o3  Cja-Mir-506-P6o4 
Orthologues Hsa-Mir-506-P6e  Laf-Mir-506  Mml-Mir-506-P6e  Pab-Mir-506-P6e 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 138011554-138011610 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAAUCAGUCAUGCUAUGGGAGGUGUCCUACUCAGAAAGGUGACAGUCACUUAGAUUACAUGUCGCUGUUUCCUUUCUGAGUAGAAUAAGGCUUACGAAGUACAAGUUUGUGGUG
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Structure
        10          20        30        40        50        
CCACAAUCAGUCAUGCUA--|   AGG   C             U      C  UUAGA 
                    UGGG   UGU CUACUCAGAAAGG GACAGU AC     \
                    AUUC   AUA GAUGAGUCUUUCC UUGUCG UG     U
GUGGUGUUUGAACAUGAAGC^   GGA   A             U      C  UACAU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-506-P6e_5p* (predicted)
mirBase accessionNone
Sequence 
0- UACUCAGAAAGGUGACAGUCAC -22
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Mature sequence

Cja-Mir-506-P6e_3p (predicted)
mirBase accessionNone
Sequence 
35- CGCUGUUUCCUUUCUGAGUAGA -57
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