| MirGeneDB ID | Mml-Mir-506-P1d |
|---|---|
| Family name | MIR-506 (all species) |
| Seed | GAUUGAA |
| Species | Rhesus monkey (Macaca mulatta) |
| MiRBase ID | |
| Paralogues | Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1e Mml-Mir-506-P2b Mml-Mir-506-P3 Mml-Mir-506-P4 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mml-Mir-506-P6a Mml-Mir-506-P6b Mml-Mir-506-P6c Mml-Mir-506-P6d Mml-Mir-506-P6e |
| Orthologues | Cfa-Mir-506-P1 Cja-Mir-506-P1d Hsa-Mir-506-P1d Laf-Mir-506 Pab-Mir-506-P1d Rno-Mir-506-P1 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014356.1: 143290733-143290793 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-506-P1d) |
Mir-506-P5o3
CM014356.1: 143252920-143252977 [-]
UCSC
Ensembl
Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAUCCUUAGACAUGCUGUCUGUGGUACCUUACUCGAGAGAGUAGCAAUCACAUAUGGUAAUCACAUAUGAUUGAAACCUCUACGAGUAGUGUAACGCAUGACAUAUGCAGCACAUGUAAUGet precursor sequence |
| Structure | 10 20 30 40 50 CCAUCCUUAGACAUGCU- - G C -| A AG CAUAUGGU GUC UGUG UAC UUACUCG AGAG GU CAAUCA \ CAG ACGC AUG GAUGAGC UCUC CA GUUAGU A UAAUGUACACGACGUAUA U A U A^ - AA AUACACUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Mml-Mir-506-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UACUCGAGAGAGUAGCAAUCACA -23
Get sequence
|
| Mature sequence | Mml-Mir-506-P1d_3p |
| mirBase accession | None |
| Sequence |
38- UGAUUGAAACCUCUACGAGUAGU -61
Get sequence
|
