Mir-506-P1c4

MirGeneDB ID

Mml-Mir-506-P1c4

Family name

MIR-506 (all species)

Seed

GAUUGGU

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-509-2

Paralogues

Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P1e Mml-Mir-506-P2b Mml-Mir-506-P3 Mml-Mir-506-P4 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mml-Mir-506-P6a Mml-Mir-506-P6b Mml-Mir-506-P6c Mml-Mir-506-P6d Mml-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1c Laf-Mir-506 Rno-Mir-506-P1

Node of Origin (locus)

M. mulatta

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 143294958-143295015 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1c4)

Mir-506-P5o3 CM014356.1: 143252920-143252977 [-] UCSC Ensembl
Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl
Mir-506-P1c5 CM014356.1: 143294073-143294130 [-] UCSC Ensembl
Mir-506-P1c4 CM014356.1: 143294958-143295015 [-] UCSC Ensembl
Mir-506-P1b CM014356.1: 143303098-143303155 [-] UCSC Ensembl
Mir-506-P1a CM014356.1: 143309725-143309782 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUACAGGCAGUGGCAAUCAUGUAUAGUUAAAAAUGAUUGGUAUGUCUGUGGGUAGAGUAAUGCAUGACACAUGCAACAUACAUGAU

Get precursor sequence

Structure

        10          20        30         40        50        
CCAUCCUCAGACAUGCU-  -    GG   C   -|        G  G       GUAUA 
                  GU GUGU  UAC CUA CUACAGGCA UG CAAUCAU     G
                  CA UACG  AUG GAU GGUGUCUGU AU GUUAGUA     U
UAGUACAUACAACGUACA  G    UA   A   G^        -  G       AAAAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-506-P1c4_5p*

mirBase accession

None

Sequence

0- UACUACAGGCAGUGGCAAUCAUG -23

Get sequence

Mature sequence

Mml-Mir-506-P1c4_3p

mirBase accession

MIMAT0005765

Sequence

35- UGAUUGGUAUGUCUGUGGGUAGA -58

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Proposed targets

TargetScanVert: mml-miR-509