Mir-506-P2b

MirGeneDB ID

Rno-Mir-506-P2b

Family name

MIR-506 (all species)

Seed

UUGGUAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-547

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P4 Rno-Mir-506-P5 Rno-Mir-506-P11 Rno-Mir-506-P13 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P16 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25

Orthologues

Bta-Mir-506-P2b1 Bta-Mir-506-P2b2 Cfa-Mir-506-P2b Cpo-Mir-506-P2b Dno-Mir-506-P2b Eca-Mir-506-P2b3 Eca-Mir-506-P2b4 Hsa-Mir-506-P2b Laf-Mir-506 Mml-Mir-506-P2b Mmr-Mir-506-P2b Mmu-Mir-506-P2b Pab-Mir-506-P2b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 155338852-155338909 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P2b)

Mir-506-P1 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2b chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P4 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P5 chrX: 155344207-155344263 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACCUUCAGUCACAUAGUGUGUGAUGUAUCACUUCAGGAUGUACCACCCAUUUAAUGGAAAAUAUGAUUGGUACUUCUUUAAGUGAGAUAAUGCACACUAACUGCCACGUCAAUACU

Get precursor sequence

Structure

        10          20        30        40        50        
CUACCUUCAGUCACAUA--|      A   A      C    U      CC  UUUAAU 
                   GUGUGUG UGU UCACUU AGGA GUACCA  CA      G
                   CACACGU AUA AGUGAA UUCU CAUGGU  GU      G
UCAUAACUGCACCGUCAAU^      A   G      U    U      UA  AUAAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-506-P2b_5p*

mirBase accession

MIMAT0017368

Sequence

0- CACUUCAGGAUGUACCACCCA -21

Get sequence

Proposed targets

TargetScanVert: rno-miR-547-5p
miRDB: MIMAT0017368

Mature sequence

Rno-Mir-506-P2b_3p

mirBase accession

MIMAT0012851

Sequence

37- AUUGGUACUUCUUUAAGUGAG -58

Get sequence

Proposed targets

microrna.org: MIMAT0012851
TargetScanVert: rno-miR-547-3p
miRDB: MIMAT0012851