Mir-506-P16

MirGeneDB ID

Rno-Mir-506-P16

Family name

MIR-506 (all species)

Seed

ACUCCAU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-880

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2b Rno-Mir-506-P4 Rno-Mir-506-P5 Rno-Mir-506-P11 Rno-Mir-506-P13 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25

Orthologues

Laf-Mir-506 Mmu-Mir-506-P16

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 151281998-151282055 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P16)

Mir-506-P24 chrX: 151252838-151252893 [-] UCSC Ensembl
Mir-506-P23 chrX: 151253328-151253384 [-] UCSC Ensembl
Mir-506-P22 chrX: 151260323-151260379 [-] UCSC Ensembl
Mir-506-P21 chrX: 151260712-151260770 [-] UCSC Ensembl
Mir-506-P19 chrX: 151272114-151272171 [-] UCSC Ensembl
Mir-506-P25 chrX: 151272836-151272891 [-] UCSC Ensembl
Mir-506-P18 chrX: 151274374-151274430 [-] UCSC Ensembl
Mir-506-P17 chrX: 151276038-151276097 [-] UCSC Ensembl
Mir-506-P16 chrX: 151281998-151282055 [-] UCSC Ensembl
Mir-506-P15 chrX: 151283471-151283527 [-] UCSC Ensembl
Mir-506-P14 chrX: 151283920-151283976 [-] UCSC Ensembl
Mir-506-P13 chrX: 151287797-151287853 [-] UCSC Ensembl
Mir-3580 chrX: 151295627-151295682 [-] UCSC Ensembl
Mir-506-P11 chrX: 151297377-151297433 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUCAUUGAACAAGCUGUGUGCACUGCAAUACUCAGAUUGGUAUGAGUCACUUCCUAAAACAUGUUACUCCAUUCAUUCUGAGUAGAGCAAGGCACACCAAACACCAGUUUGUUUUG

Get precursor sequence

Structure

        10          20        30        40        50        
ACUUCAUUGAACAAGCU--|     AC   AA        U   UAU    C  UUCCU 
                   GUGUGC  UGC  UACUCAGA UGG   GAGU AC     A
                   CACACG  ACG  AUGAGUCU ACU   CUCA UG     A
GUUUUGUUUGACCACAAAC^     GA   AG        U   UAC    U  UACAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-506-P16_5p*

mirBase accession

MIMAT0017292

Sequence

0- UACUCAGAUUGGUAUGAGUCAC -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-880-5p
miRDB: MIMAT0017292

Mature sequence

Rno-Mir-506-P16_3p

mirBase accession

MIMAT0005288

Sequence

36- UACUCCAUUCAUUCUGAGUAGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0005288
TargetScanVert: rno-miR-880-3p
miRDB: MIMAT0005288