MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-3580

Family name MIR-3580 (all species)
Seed GACUAGG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-3580
Paralogues
Orthologues
Node of Origin (locus) R. norvegicus
Node of Origin (family) R. norvegicus
Genome context
(rn6)		 chrX: 151295627-151295682 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3580)		 Mir-506-P24 chrX: 151252838-151252893 [-] UCSC Ensembl
Mir-506-P23 chrX: 151253328-151253384 [-] UCSC Ensembl
Mir-506-P22 chrX: 151260323-151260379 [-] UCSC Ensembl
Mir-506-P21 chrX: 151260712-151260770 [-] UCSC Ensembl
Mir-506-P19 chrX: 151272114-151272171 [-] UCSC Ensembl
Mir-506-P25 chrX: 151272836-151272891 [-] UCSC Ensembl
Mir-506-P18 chrX: 151274374-151274430 [-] UCSC Ensembl
Mir-506-P17 chrX: 151276038-151276097 [-] UCSC Ensembl
Mir-506-P16 chrX: 151281998-151282055 [-] UCSC Ensembl
Mir-506-P15 chrX: 151283471-151283527 [-] UCSC Ensembl
Mir-506-P14 chrX: 151283920-151283976 [-] UCSC Ensembl
Mir-506-P13 chrX: 151287797-151287853 [-] UCSC Ensembl
Mir-3580 chrX: 151295627-151295682 [-] UCSC Ensembl
Mir-506-P11 chrX: 151297377-151297433 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUCAUUAAUGUAAUAGUGUGCUAUGCCCUGCUUGUACUUAUUCUGGUGACAUGAGGUAUCUGUGACUAGGGUAGUAUGAGUAGAGUAAAGUUCACCAAAUUCUUCAUUUGAUCA
Get precursor sequence
Structure
        10          20        30        40        50        
UCCUCAUUAAUGUAAUA--|  U   A   C     UG    U        G   UGAG 
                   GUG GCU UGC CUGCU  UACU AUUCUGGU ACA    \
                   CAC UGA AUG GAUGA  AUGA UGGGAUCA UGU    G
ACUAGUUUACUUCUUAAAC^  U   A   A     GU    -        G   CUAU 
    110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
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Star sequence

Rno-Mir-3580_5p*
mirBase accessionMIMAT0017868
Sequence 
0- UGCUUGUACUUAUUCUGGUGACA -23
Get sequence
Proposed targets TargetScanVert: rno-miR-3580-5p
miRDB: MIMAT0017868
Mature sequence

Rno-Mir-3580_3p
mirBase accessionMIMAT0017869
Sequence 
34- UGACUAGGGUAGUAUGAGUAGA -56
Get sequence
Proposed targets TargetScanVert: rno-miR-3580-3p
miRDB: MIMAT0017869